PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g07510.1
Common NameCRLL2, LOC9266422, Os10g0162600, OSJNBb0042K08.9, OSNPB_100162600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 270aa    MW: 27974.1 Da    PI: 6.9166
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g07510.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.71.1e-39331331100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkC+++C++apyf +e  +++fa+vhk+FGasnv+kll+++p ++r da+ +++yeA+ar+rdPvyG+v++i++lq+q++ l++
  LOC_Os10g07510.1  33 PCGACKFLRRKCVQGCIFAPYFDSEAgAAHFAAVHKVFGASNVSKLLQQIPAHRRLDAVVTICYEAQARLRDPVYGCVAHIFHLQHQVAGLQS 125
                       7*********************998879***************************************************************** PP

            DUF260  93 elallkee 100
                       el++l+ +
  LOC_Os10g07510.1 126 ELNYLQGH 133
                       ***99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381276.5E-1391269IPR017394LOB domain-containing protein 18/20
PROSITE profilePS5089123.10232134IPR004883Lateral organ boundaries, LOB
PfamPF031955.6E-4033131IPR004883Lateral organ boundaries, LOB
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MSSSVVVSAS GSGSGGGGGG GGGGAGGGGG GGPCGACKFL RRKCVQGCIF APYFDSEAGA  60
AHFAAVHKVF GASNVSKLLQ QIPAHRRLDA VVTICYEAQA RLRDPVYGCV AHIFHLQHQV  120
AGLQSELNYL QGHLSTMELP SPPPYVAGPT LAPPQPQPLM PMTAAANFNF SDLPSSSAAN  180
IPVTADLSTL FDPLPAAQPQ WGLYQQQQHH HQQLHHHPYD RMGDGSSSSR GGDDDGSDGG  240
DLQALARELL DRHGRSSSSS KLEPPPHTQ*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ7XGL4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g07510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g07510
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2002360.0AB200236.1 Oryza sativa Japonica Group CRLL2 mRNA for LOB domain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613830.10.0PREDICTED: LOB domain-containing protein 30
SwissprotO813232e-63LBD30_ARATH; LOB domain-containing protein 30
TrEMBLA0A0E0B8650.0A0A0E0B865_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0QWJ10.0A0A0E0QWJ1_ORYRU; Uncharacterized protein
TrEMBLQ7XGL40.0Q7XGL4_ORYSJ; LOB domain protein
STRINGLOC_Os10g07510.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40515100
MonocotsOGMP33463782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.13e-58LBD family protein
Publications ? help Back to Top
  1. Inukai Y, et al.
    Crown rootless1, which is essential for crown root formation in rice, is a target of an AUXIN RESPONSE FACTOR in auxin signaling.
    Plant Cell, 2005. 17(5): p. 1387-96
    [PMID:15829602]