PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g07080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 158aa    MW: 16860 Da    PI: 12.6347
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g07080.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0014131149523
                       TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                       +C++s sr+s+L+rH  ++
  LOC_Os10g07080.1 131 ICHTSTSRRSSLRRHAERC 149
                       7**************9886 PP

Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MSRHLSFGTP SPTTTRRCPC RRRSRRRNST SPPPSSATPW DATTSTATAA RSAWCSSASA  60
TRRVRLPLPP STTPPPPAPG PLRPPPRPPS PTRMTGDFAC PHLASWWGGP RSTSGALGGF  120
SGTGSATRWS ICHTSTSRRS SLRRHAERCS CRRRTGG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.468640.0leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329920930.0
Expression AtlasQ7XGM5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g07080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g07080
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1166000.0AC116600.1 Oryza sativa Japonica Group chromosome 10 clone OSJNAa0036D19, complete sequence.
GenBankAC0877230.0AC087723.3 Oryza sativa chromosome 10 clone OSJNBa0036D19, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ7XGM56e-99Q7XGM5_ORYSJ; Expressed protein
STRINGLOC_Os10g07080.12e-98(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5290222