PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g39850.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 217aa    MW: 23449.2 Da    PI: 9.1838
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g39850.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.64.9e-1667114555
               AP2   5 GVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       GVr ++ +g+++AeIrd    + k +r++lg+f+++e Aa a+++a+ + +g
  LOC_Os09g39850.1  67 GVRKRP-WGKFAAEIRDsT--R-KGARVWLGTFDSPEAAAMAYDQAAFSVRG 114
                       ******.**********32..2.24**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.62864122IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2165123IPR016177DNA-binding domain
PRINTSPR003672.3E-76576IPR001471AP2/ERF domain
PfamPF008476.2E-1266114IPR001471AP2/ERF domain
SMARTSM003801.2E-3167128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2767123IPR001471AP2/ERF domain
CDDcd000187.19E-1667122No hitNo description
PRINTSPR003672.3E-788104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MSDRDVDMHI LTALMADMAD SSSSSSSSSS SSSSDDSDMR ASAAAAEPEH RRSPAPPPPP  60
RQQQLIGVRK RPWGKFAAEI RDSTRKGARV WLGTFDSPEA AAMAYDQAAF SVRGASAVLN  120
FPLHRVQESL QALALGAAGG SPVLALKRRH SIRKRRKPTK HMLLMQQQQQ EPTVVELEDL  180
GADYLEELLR LSESSSSSSS SSISNFTTTP NRHCQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2267123561ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.849070.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1160142320.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g39850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g39850
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankAP0061620.0AP006162.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1331F11.
GenBankAK2412810.0AK241281.1 Oryza sativa Japonica Group cDNA, clone: J065136G16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612362.11e-155PREDICTED: ethylene-responsive transcription factor 1B
SwissprotQ8LDC81e-47ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0E0QVE71e-155A0A0E0QVE7_ORYRU; Uncharacterized protein
STRINGLOC_Os09g39850.11e-155(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-35ethylene response factor 1