PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g38000.1
Common NameOs09g0552800, OSNPB_090552800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 367aa    MW: 40137.1 Da    PI: 4.9939
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g38000.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.12e-541162451128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lppGfrFhPtdeelv++yLk+k++g k+el ++i+evd+yk+ePw+L  k  + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++
  LOC_Os09g38000.1 116 LPPGFRFHPTDEELVNYYLKRKIHGLKIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRR 207
                       79****************************.99**************84335556888*********************************** PP

               NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       v+++ +g+++g+kktLv+y+grap+g++tdWvmheyrl
  LOC_Os09g38000.1 208 VVHQhGGRAIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 245
                       *99978899***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-64107268IPR003441NAC domain
PROSITE profilePS5100560.845116268IPR003441NAC domain
PfamPF023651.7E-29117245IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEKVQASCEG DQGICKRGAK GGHPIDQNLV GGMTMSTGVP TTVPPTPALA ALKNLLIRVV  60
AAAAGKGLSS SAEEARCLWA KLPAPEEEEE AGQQPERPPS SYRRPPTSTL MAPVGLPPGF  120
RFHPTDEELV NYYLKRKIHG LKIELDIIPE VDLYKCEPWE LAEKSFLPSR DPEWYFFGPR  180
DRKYPNGFRT NRATRAGYWK STGKDRRVVH QHGGRAIGMK KTLVYYRGRA PQGVRTDWVM  240
HEYRLDDKDC EDTMPIKDTY ALCRVFKKNA ICTEVEELQG QCSMALLEGA CQQLLASGGG  300
GSQEQYETPS PPDVPVGSTF GGADADAEDD PDKDDSWMQF ISDDAWCSST ADGGAEESTS  360
CVALAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-5111226811168Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0P0XQ22
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00363DAPTransfer from AT3G17730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g38000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g38000
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1375960.0AC137596.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 9 clone OSJNBb0031H05, complete sequence.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankAP0055640.0AP005564.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1228_C03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661516.20.0PREDICTED: NAC domain-containing protein 92-like
SwissprotQ9FFI56e-83NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A0P0XQ220.0A0A0P0XQ22_ORYSJ; Os09g0552800 protein
STRINGLOC_Os09g38000.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
MonocotsOGMP37133879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-114NAC domain containing protein 57