PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g35030.1
Common NameCBF3, DREB1A, ERF24, LOC4347620, Os09g0522200, OSJNOa273B05.11
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 239aa    MW: 25390.1 Da    PI: 4.8433
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g35030.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.5e-184999153
               AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53
                      + ++GVr++ + grWv+e+r+p   g +  r +lg+f+tae+Aa+a++aa++++
  LOC_Os09g35030.1 49 PVFRGVRRRGNAGRWVCEVRVP---GrRGCRLWLGTFDTAEGAARAHDAAMLAI 99
                      579******************9...6445**********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-1349100IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-155099IPR016177DNA-binding domain
PROSITE profilePS5103219.66450115IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-2450117IPR001471AP2/ERF domain
SMARTSM003801.5E-1350121IPR001471AP2/ERF domain
PRINTSPR003676.6E-55162IPR001471AP2/ERF domain
CDDcd000187.15E-1751117No hitNo description
PRINTSPR003676.6E-57591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MCGIKQEMSG ESSGSPCSSA SAERQHQTVW TAPPKRPAGR TKFRETRHPV FRGVRRRGNA  60
GRWVCEVRVP GRRGCRLWLG TFDTAEGAAR AHDAAMLAIN AGGGGGGGAC CLNFADSAWL  120
LAVPRSYRTL ADVRHAVAEA VEDFFRRRLA DDALSATSSS STTPSTPRTD DDEESAATDG  180
DESSSPASDL AFELDVLSDM GWDLYYASLA QGMLMEPPSA ALGDDGDAIL ADVPLWSY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.582620.0leaf
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ64MA1
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress. {ECO:0000269|PubMed:12609047, ECO:0000269|PubMed:16284406}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g35030.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt and cold stress. {ECO:0000269|PubMed:12609047}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g35030
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8859560.0JQ885956.1 Oryza sativa isolate UR5 DRE-binding factor 1A (DREB1A) gene, complete cds.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankAP0068590.0AP006859.1 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa273B05.
GenBankAK2876920.0AK287692.1 Oryza sativa Japonica Group cDNA, clone: J065128G03, full insert sequence.
GenBankAF3009700.0AF300970.1 Oryza sativa DRE-binding protein 1A mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610912.11e-173PREDICTED: dehydration-responsive element-binding protein 1A
SwissprotQ64MA11e-175DRE1A_ORYSJ; Dehydration-responsive element-binding protein 1A
TrEMBLA0A0E0B5H21e-173A0A0E0B5H2_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0IMJ11e-173A0A0E0IMJ1_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QU081e-173A0A0E0QU08_ORYRU; Uncharacterized protein
TrEMBLI6SBR01e-173I6SBR0_ORYSA; DRE-binding factor 1A
TrEMBLK7SPM11e-173K7SPM1_ORYSI; DRE-binding factor 1A
STRINGLOC_Os09g35030.11e-172(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1208746
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.13e-35C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Dubouzet JG, et al.
    OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression.
    Plant J., 2003. 33(4): p. 751-63
    [PMID:12609047]
  2. Skinner JS, et al.
    Structural, functional, and phylogenetic characterization of a large CBF gene family in barley.
    Plant Mol. Biol., 2005. 59(4): p. 533-51
    [PMID:16244905]
  3. Ito Y, et al.
    Functional analysis of rice DREB1/CBF-type transcription factors involved in cold-responsive gene expression in transgenic rice.
    Plant Cell Physiol., 2006. 47(1): p. 141-53
    [PMID:16284406]
  4. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]