PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g35010.1
Common NameDREB1B, ERF31, LOC4347618, Os09g0522000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 219aa    MW: 23237.9 Da    PI: 4.9735
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g35010.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.96.9e-153187155
               AP2  1 sgykGVrwdkkrgr......WvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                      + y+GVr++   gr      Wv+e+r+p   g +  r +lg+f tae Aa+a++aa+++l+g
  LOC_Os09g35010.1 31 PVYRGVRRRG--GRpgaagrWVCEVRVP---GaRGSRLWLGTFATAEAAARAHDAAALALRG 87
                      679***8765..55556666*******9...6666*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.8E-103187IPR001471AP2/ERF domain
PROSITE profilePS5103222.1553295IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-183297IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-273297IPR001471AP2/ERF domain
SMARTSM003806.7E-1932101IPR001471AP2/ERF domain
PRINTSPR003672.6E-53344IPR001471AP2/ERF domain
PRINTSPR003672.6E-56177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEVEEAAYRT VWSEPPKRPA GRTKFRETRH PVYRGVRRRG GRPGAAGRWV CEVRVPGARG  60
SRLWLGTFAT AEAAARAHDA AALALRGRAA CLNFADSAWR MPPVPASAAL AGARGVRDAV  120
AVAVEAFQRQ SAAPSSPAET FANDGDEEED NKDVLPVAAA EVFDAGAFEL DDGFRFGGMD  180
AGSYYASLAQ GLLVEPPAAG AWWEDGELAG SDMPLWSY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.58161e-136leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172099571e-136
Expression AtlasQ3T5N4-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress. {ECO:0000269|PubMed:16284406}.
Function -- GeneRIF ? help Back to Top
  1. Although in the absence of stress, OsDREB1B gene expression was not regulated by light, given previous reports, it remains possible that OsPIF14 has a role in light modulation of stress responses
    [PMID: 26732823]
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g35010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:12609047}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g35010
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8859570.0JQ885957.1 Oryza sativa isolate UR4 DRE binding protein (DREB1B) gene, complete cds.
GenBankAY7858940.0AY785894.1 Oryza sativa (japonica cultivar-group) cultivar Nipponbare OsDREB1B.1 (DREB1B) mRNA, complete cds.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankAP0068590.0AP006859.1 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa273B05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610928.11e-153PREDICTED: dehydration-responsive element-binding protein 1B
SwissprotQ3T5N41e-154DRE1B_ORYSJ; Dehydration-responsive element-binding protein 1B
TrEMBLI6TGM01e-152I6TGM0_ORYSA; DRE binding protein
STRINGLOC_Os09g35010.11e-152(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1909422
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.12e-12dehydration response element B1A
Publications ? help Back to Top
  1. Dubouzet JG, et al.
    OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression.
    Plant J., 2003. 33(4): p. 751-63
    [PMID:12609047]
  2. Skinner JS, et al.
    Structural, functional, and phylogenetic characterization of a large CBF gene family in barley.
    Plant Mol. Biol., 2005. 59(4): p. 533-51
    [PMID:16244905]
  3. Ito Y, et al.
    Functional analysis of rice DREB1/CBF-type transcription factors involved in cold-responsive gene expression in transgenic rice.
    Plant Cell Physiol., 2006. 47(1): p. 141-53
    [PMID:16284406]
  4. Nakano T,Suzuki K,Fujimura T,Shinshi H
    Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
    Plant Physiol., 2006. 140(2): p. 411-32
    [PMID:16407444]
  5. Cordeiro AM, et al.
    Rice phytochrome-interacting factor protein OsPIF14 represses OsDREB1B gene expression through an extended N-box and interacts preferentially with the active form of phytochrome B.
    Biochim. Biophys. Acta, 2016. 1859(2): p. 393-404
    [PMID:26732823]