PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g34330.1
Common NameLOC4347601, Os09g0519100, OSJNOa211K08.10, P0498F03.15
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 285aa    MW: 29745.5 Da    PI: 6.5161
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g34330.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.8e-12111156454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +h e+Er+RR+++N +f  Lr  +P+       +++Ka+ L  A  YI +L
  LOC_Os09g34330.1 111 SHVEAERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAAAYIAEL 156
                       89************************6.....49**************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.021107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-15109173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.31E-11110161No hitNo description
PfamPF000101.4E-9110156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-15111170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-10113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDELLSPCSS FSPPSPSSMF STGAAAAAAH AVLEFTSCEV PDEWLMGDVV MAKNEEDVGG  60
GELWPVFAGG SLSPDSELSE LPRSFEAAAA QRPAKRRGRK PGPRPDGPTV SHVEAERQRR  120
EKLNRRFCDL RAAVPTVSRM DKASLLADAA AYIAELRARV ARLESDARQA AAARFEPSSC  180
GGGGNASYHG GGGGGGAAPG LDEAVEVRKM GRDAAAVRVT TTGARHAPAR LMGALRSLEL  240
PVQHACVMRV HGATTVQEVL VDVPAALQDG DALRAALLQR LQDS*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154801980.0
Expression AtlasQ69IU0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g34330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g34330
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankAP0072540.0AP007254.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa211K08.
GenBankAP0065250.0AP006525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0498F03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611415.10.0PREDICTED: transcription factor MYC2
TrEMBLA0A0E0IMH20.0A0A0E0IMH2_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QTX70.0A0A0E0QTX7_ORYRU; Uncharacterized protein
TrEMBLA2Z3690.0A2Z369_ORYSI; Putative uncharacterized protein
TrEMBLI1QQI50.0I1QQI5_ORYGL; Uncharacterized protein
TrEMBLQ69IU00.0Q69IU0_ORYSJ; Os09g0519100 protein
STRINGBGIOSGA029426-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os09g34330.10.0(Oryza sativa Japonica Group)
STRINGORGLA09G0131400.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1312745
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.12e-10bHLH family protein