PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g32510.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 399aa    MW: 42178.1 Da    PI: 4.7151
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g32510.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.62.6e-09184231455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k + Ka +L + ++Y++sLq
  LOC_Os09g32510.1 184 SHSLAERVRREKISQRMKVLQDLVPGC----NKVVGKALMLDEIINYVQSLQ 231
                       8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.76E-17178249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-10178235No hitNo description
PROSITE profilePS5088815.459180230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-17180248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-6184231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-10186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDSDYVAGLL MSAAAAGLDL GVLDGGGGAF LETLCGGPGF AERAARLCGG GAGLFGLPAV  60
GNAERGGCSR EGSSVSDPAW AHATGGGGDN ARKRKAPASA AAGKDKDAVV GGGSSPCEVG  120
EAKAPDSKKC KAEVNPKVEE AASDGSVGDR VQKQGKGKNS SKPAAEPPKD YVHVRARRGQ  180
ATDSHSLAER VRREKISQRM KVLQDLVPGC NKVVGKALML DEIINYVQSL QQQVEFLSMK  240
LATVNPQLDF GNLSTLLQKD MFQSCGPSVN SVFPLESAGT AFPFCDQADF FQSFGLGAME  300
NQCSLDLANT ALPHTGSTQY AFQKQVIAAL KNLQSTEQMV LTCIYDDNTV CLWFSFQQRD  360
LWEDNTFQYN DEQSQEDAVS APNFDGQLQA ADHTEIEF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g32510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g32510
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0590360.0AK059036.1 Oryza sativa Japonica Group cDNA clone:001-021-C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651378.10.0PREDICTED: transcription factor bHLH62
SwissprotQ9SRT23e-59BH062_ARATH; Transcription factor bHLH62
TrEMBLI1QQ650.0I1QQ65_ORYGL; Uncharacterized protein
STRINGLOC_Os09g32510.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.27e-53bHLH family protein