PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g32040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 703aa    MW: 77265.3 Da    PI: 4.6148
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g32040.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM145.72.5e-45111432128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                       ppGfrF+Ptdeelv ++Lk+++++ + +    i++vd+yk++P++Lp+  ++++++k+w+fFs+ d+ky++g+r++r+t +gyWkatgkd+++
  LOC_Os09g32040.1  11 PPGFRFSPTDEELVLYFLKRRIATGRPTP--YIADVDVYKSHPSHLPErsALRTGDKQWFFFSRMDRKYPNGSRASRTTGEGYWKATGKDRSI 101
                       8*********************9999555..6**************9435778899************************************* PP

               NAM  93 lsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++       +g++vg kktLv+++grap+ge++dWvmhey+l
  LOC_Os09g32040.1 102 CNGggggtaSGRAVGSKKTLVYHHGRAPRGERSDWVMHEYTL 143
                       **98877777777***************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.05E-517166IPR003441NAC domain
PROSITE profilePS5100551.35710166IPR003441NAC domain
PfamPF023655.7E-2411143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MGMENPPLRW PPGFRFSPTD EELVLYFLKR RIATGRPTPY IADVDVYKSH PSHLPERSAL  60
RTGDKQWFFF SRMDRKYPNG SRASRTTGEG YWKATGKDRS ICNGGGGGTA SGRAVGSKKT  120
LVYHHGRAPR GERSDWVMHE YTLLADALPP AARDREAYAL YKLFHKSGAG PKNGEQYGAP  180
FREEDWLDDD DHHHDQLPAE AALPAPATTS GRAATTEEHA DFELPGGDLD VLLAQIENDQ  240
DIIEAQLDFS THVTSQVQIQ HRVHQGWLSD DGGKSDVADA TTSGSALLMA ENTCAELPID  300
GLEQLLMQIS DDQQTVEMLS GFSASVPQSQ LQHDYHQGCL GVHREEVGVA DSTTVSSAVV  360
TEECTVRELQ DIEGLLMQIE NDQENAESLP DFSTPVHLHD CHQAAFGDFQ GSQRATFNIA  420
NLSTMVQESP NFDLQTGPSN QITESILTTE PMNGETNAVE ETSPLRSMSV LGSYDRQDGD  480
DEFLEINDFF DPEDLEQILG STRSQNLIPA DDGVFDSLQY SDAPMFLPGS FDRTGVVAEN  540
HYVEFGASGI QNQGFQHTTE LLAHNQVALN VRNHMKDNHV VFSHSSDATI IHTVNEQPPN  600
RSSNASQSWF NGALSALLDS VPSSPAMAAE NIGLNRTLQR ISSFRSQQPA REEVSSTLIN  660
TRRRGGGLIF ISLMVLLVAI MWTFSNGSAV KLSKGLWKFP ST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-42814313140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.878660.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329844460.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g32040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g32040
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0992370.0AK099237.1 Oryza sativa Japonica Group cDNA clone:J013112C23, full insert sequence.
GenBankAK0685010.0AK068501.1 Oryza sativa Japonica Group cDNA clone:J013155B08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611740.10.0PREDICTED: NAC domain-containing protein 17 isoform X1
TrEMBLA0A0E0QT650.0A0A0E0QT65_ORYRU; Uncharacterized protein
STRINGLOC_Os09g32040.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1703733
MonocotsOGMP91282840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.12e-62NAC domain containing protein 16