PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g31438.1
Common NameLOC9266075, Os09g0491532, OsJ_028679, SPL17
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family SBP
Protein Properties Length: 401aa    MW: 41650.1 Da    PI: 8.5722
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g31438.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP119.22e-3773156177
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTS.......SEEETTT--SS--S-STTTT-------S-- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCs.......rfhelsefDeekrsCrrrLakhnerrrkkq 77 
                       +CqvegC +dls +k y+ rhkvC +h+k p v+v+gleqrfCqqCs       rfh+l efD+ek+sCrrrLa+hnerrrk++
  LOC_Os09g31438.1  73 RCQVEGCGVDLSGVKPYYCRHKVCYMHAKEPIVVVAGLEQRFCQQCSrcsvhmvRFHQLPEFDQEKKSCRRRLAGHNERRRKPT 156
                       6*********************************************955555555***************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114128.66771155IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.1E-2971142IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.89E-3672158IPR004333Transcription factor, SBP-box
PfamPF031101.5E-2774154IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MATGGSGGGG GGGGGGDDVH GLKFGKKIYF EQDAAASASA AAVESSSTSS GGGGKKGKGV  60
AAAAAPPPPL PPRCQVEGCG VDLSGVKPYY CRHKVCYMHA KEPIVVVAGL EQRFCQQCSR  120
CSVHMVRFHQ LPEFDQEKKS CRRRLAGHNE RRRKPTPGPL SSRYGRLAAS FHEEPGRSRS  180
FVVDFSYPRV PSSVRDAWPA IQPSDRMSGS IQWQGGHELH PHRSAVAGYS DHHAFSSHGG  240
SAAGAPMLHH PAFELTSGGC LAGVATDSSC ALSLLSTQPW DTTQSTSSHN RSPPMSSTAS  300
AFGGGNNPVS PSVMASNYMA ASPGWNSSSR GHDGARNVHL PPPHGVVLNE VPPGSVHHGH  360
FSGELELALQ GGAPSNRPEA EHGSGSGAFS HSTNAMNWSL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-26741541184squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.932870.0callus| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329735790.0
Expression AtlasA3C057-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g31438.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g31438
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0635610.0AK063561.1 Oryza sativa Japonica Group cDNA clone:001-117-F03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610961.10.0PREDICTED: squamosa promoter-binding-like protein 17 isoform X1
SwissprotA3C0570.0SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLA0A0E0ILK70.0A0A0E0ILK7_ORYNI; Uncharacterized protein
STRINGLOC_Os09g31438.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9717230
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-42squamosa promoter binding protein-like 9
Publications ? help Back to Top
  1. Xie K,Wu C,Xiong L
    Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and microRNA156 in rice.
    Plant Physiol., 2006. 142(1): p. 280-93
    [PMID:16861571]
  2. Yang Z, et al.
    Comparative study of SBP-box gene family in Arabidopsis and rice.
    Gene, 2008. 407(1-2): p. 1-11
    [PMID:17629421]