PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g31300.2
Common NameLOC4347431, Os09g0487900, OSNPB_090487900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 400aa    MW: 41741.6 Da    PI: 8.9285
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g31300.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.5e-13331376655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR ri +++ +L+el+P+      k  + a++L +Av+YIk+Lq
  LOC_Os09g31300.2 331 SIAERVRRTRISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKELQ 376
                       689*********************7....467*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.243325375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-15328381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-12329379No hitNo description
Gene3DG3DSA:4.10.280.105.8E-14330380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-12331381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-10331376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MYGAPVSKDL SLQPAGVRTP PQMSSPGLLR YRSAPSTLLG EVCGDFVLPG GGGGGGQLQL  60
QLQQQRPGSP DHAADTVLAR FLAGHGGHDN KPPRPAAHFA PPEDSMASHQ QQLMYQSHQQ  120
QQQMASAMEG LYRTVSSGGT ESTAAAAGNS LLRQSSSPAG FLNHLTMDNG YGNMLRAGMG  180
GGGGGGDPRL KGQLSFSSRQ GSVMSQISEM GSEDEELAGG GGSPEAGSNG GGAARGGYGG  240
GYAMGSSAWE EPSPPATSLL PDSSLPSKRP RDDLPRQLSL PAASKNSSKP PSSASAAASP  300
EMAAIEKFLQ FQDAVPCKIR AKRGCATHPR SIAERVRRTR ISERIRKLQE LVPNMEKQTN  360
TADMLDLAVD YIKELQKQVL NDSRSSCTCS ASKQKHFAG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.53112e-79callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329853152e-79
Expression AtlasQ0J0Q4-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g31300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g31300
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1209020.0AK120902.1 Oryza sativa Japonica Group cDNA clone:J023030N23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612612.10.0PREDICTED: transcription factor bHLH130
TrEMBLQ0J0Q40.0Q0J0Q4_ORYSJ; Os09g0487900 protein
STRINGLOC_Os09g31300.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.16e-35bHLH family protein