PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g29930.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 144aa    MW: 16074 Da    PI: 9.1399
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g29930.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH58.51.2e-1856105255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  LOC_Os09g29930.3  56 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 105
                       899*************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-2051123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-2552125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.32E-1452109No hitNo description
PROSITE profilePS5088816.95254104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-1656105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-1360110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MDSGSRSSGG AGFDDDDGVA ARREVSSSLK ELTVRVDGKG GSCSGSGTDQ RPSSPRSKHS  60
ATEQRRRSKI NDRFQILREL LPHSDQKRDK ATFLLEVIEY IRFLQEKVQK FEASVPEWNQ  120
ENAKILPWVI TTHFYPPKPA LLD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.167411e-165callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329871051e-165
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g29930.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g29930
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8372610.0EU837261.1 Oryza sativa Japonica Group clone KCB846A08 bHLH transcription factor mRNA, complete cds.
GenBankAK0713150.0AK071315.1 Oryza sativa Japonica Group cDNA clone:J023084K14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612524.14e-86PREDICTED: transcription factor BIM3 isoform X1
RefseqXP_015612525.14e-87PREDICTED: transcription factor BIM2 isoform X2
SwissprotQ9LEZ32e-35BIM1_ARATH; Transcription factor BIM1
TrEMBLB7EJ811e-88B7EJ81_ORYSJ; cDNA clone:J023084K14, full insert sequence
STRINGBGIOSGA030958-PA1e-85(Oryza sativa Indica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.32e-37bHLH family protein