PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g29930.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 342aa    MW: 36936.4 Da    PI: 6.3197
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g29930.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.45.5e-1856105255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  LOC_Os09g29930.2  56 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 105
                       889*************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1951122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-2452125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.35E-1652109No hitNo description
PROSITE profilePS5088816.95254104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-1556105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-1360110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDSGSRSSGG AGFDDDDGVA ARREVSSSLK ELTVRVDGKG GSCSGSGTDQ RPSSPRSKHS  60
ATEQRRRSKI NDRFQILREL LPHSDQKRDK ATFLLEVIEY IRFLQEKVQK FEASVPEWNQ  120
ENAKILPWSN IYFRSFWKNS QSKGQNPGDD LPDPSQFIRN GSSSGYNFTG KPDDNHNMVT  180
SAAASGAQEL VETDHAASVS YRSAETPTNI TNNVTSQAQA QWASPAGVDD CAMNSEMLNN  240
QQLAIDEGTI SLSSQYSQQL LGTLTHALES SGVDLSQSSI SVQINLGKRA VKRPGADGSS  300
SSKELPSTSA NNENMGHQLT MLGGGTEELP HPTKRHKSGN S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.167410.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329871050.0
Expression AtlasB7EJ81-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g29930.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g29930
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8372610.0EU837261.1 Oryza sativa Japonica Group clone KCB846A08 bHLH transcription factor mRNA, complete cds.
GenBankAK0713150.0AK071315.1 Oryza sativa Japonica Group cDNA clone:J023084K14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612525.10.0PREDICTED: transcription factor BIM2 isoform X2
RefseqXP_015612524.10.0PREDICTED: transcription factor BIM3 isoform X1
TrEMBLB7EJ810.0B7EJ81_ORYSJ; cDNA clone:J023084K14, full insert sequence
STRINGLOC_Os09g29930.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-55BES1-interacting Myc-like protein 2