PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g29930.1
Common NameLOC4347359, Os09g0475400, OsJ_29738, OSJNBa0026C08.39-1, OSNPB_090475400, P0556A05.2-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 505aa    MW: 54188.8 Da    PI: 7.3831
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g29930.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.69.5e-18219268255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  LOC_Os09g29930.1 219 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 268
                       889*************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-19214285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.40E-16215272No hitNo description
Gene3DG3DSA:4.10.280.105.0E-24215288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.952217267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-15219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-13223273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MGIQGNKATT REHDFLSLYT TAAKDPSLQL HDAKPPPPSQ GFFLRTHDFL QPLEKPTPAP  60
TPPPTSQLQQ QQQQAFPGGI GTFSISHVAG ARPVAAAVVK AEPTPFVLWG QPAAAAAAHP  120
VAALGHHHHH HQWTLPFAGV GQVAATAARQ QQEWKGRVGG GGFMDSGSRS SGGAGFDDDD  180
GVAARREVSS SLKELTVRVD GKGGSCSGSG TDQRPSSPRS KHSATEQRRR SKINDRFQIL  240
RELLPHSDQK RDKATFLLEV IEYIRFLQEK VQKFEASVPE WNQENAKILP WSNIYFRSFW  300
KNSQSKGQNP GDDLPDPSQF IRNGSSSGYN FTGKPDDNHN MVTSAAASGA QELVETDHAA  360
SVSYRSAETP TNITNNVTSQ AQAQWASPAG VDDCAMNSEM LNNQQLAIDE GTISLSSQYS  420
QQLLGTLTHA LESSGVDLSQ SSISVQINLG KRAVKRPGAD GSSSSKELPS TSANNENMGH  480
QLTMLGGGTE ELPHPTKRHK SGNS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.167410.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329871050.0
Expression AtlasQ69JI7-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g29930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g29930
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8372610.0EU837261.1 Oryza sativa Japonica Group clone KCB846A08 bHLH transcription factor mRNA, complete cds.
GenBankAK0713150.0AK071315.1 Oryza sativa Japonica Group cDNA clone:J023084K14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612524.10.0PREDICTED: transcription factor BIM3 isoform X1
TrEMBLQ69JI70.0Q69JI7_ORYSJ; BHLH protein family-like
STRINGLOC_Os09g29930.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13601747
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.18e-53BES1-interacting Myc-like protein 2