PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g29830.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 430aa    MW: 45416.5 Da    PI: 6.1931
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g29830.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-09257305355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  LOC_Os09g29830.2 257 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 305
                       58*************************9....556*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.28E-17252322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.94E-11252309No hitNo description
PROSITE profilePS5088815.65254304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16255321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-7257305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-11260310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MDMSESSEKG MESNASSGPG NGIPVEWQSQ FSSAFACQPS VAAQHQQHAM MDSFAAASAG  60
LWASSDVVSA MSSAAPPRGA GFLAPVPGFL QQGLGHFPVD SGFIERAARS TCFGGGMMAG  120
GPYGAADQAM GDAFGGTAEG LMDHHRNVGN DKAEEFAGNG HDEVPSSEVA GGDCSSKGSD  180
SKKRRRPNEV MGTDQVHSSN LPSDSANESV HSKDKGEESS PATTNGGKSK GKGAKETSES  240
QKEEYIHVRA RRGQATNSHS LAERLRREKI SERMKLLQDL VPGCSKVTGK AVMLDEIINY  300
VQSLQRQVEF LSMKLATVNP RLDLNIEGLL SKDLLRFPGV PSSSIGFSPE MMHPQLQLSQ  360
PGLIHGGTAG MANPDVFRRI IQAQLGAKDG SQQMPHSLNG SFSDVSQMAY PSLGSQDLSI  420
RPSQDGFQM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.384000.0callus| flower| leaf| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379910410.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g29830.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g29830
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1214180.0AK121418.1 Oryza sativa Japonica Group cDNA clone:J023133H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612419.10.0PREDICTED: transcription factor bHLH49 isoform X3
RefseqXP_015612418.10.0PREDICTED: transcription factor bHLH49 isoform X3
RefseqXP_015612417.10.0PREDICTED: transcription factor bHLH49 isoform X3
TrEMBLI1QPS20.0I1QPS2_ORYGL; Uncharacterized protein
STRINGORGLA09G0105100.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.33e-63bHLH family protein