PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g28354.1
Common NameB1342C04.35, HSF23, HSFB1, LOC4347259, Os09g0456800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 303aa    MW: 32799 Da    PI: 9.7192
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g28354.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.24.8e-32311232103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+ +++e+++++e+isw ++g+sfvv+++ efa+++Lp +Fkh nf+SFvRQLn+YgF+kv  ++         weF++ +F++g++ ll
  LOC_Os09g28354.1  31 FLTKTNQMVEESATDEVISWGKEGRSFVVWKPVEFARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WEFANGNFRRGEQGLL 114
                       9*****************************************************************99.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       + i+r+k +
  LOC_Os09g28354.1 115 SGIRRRKAT 123
                       ******975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-3427120IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.07E-3227120IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.3E-5327120IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.3E-2831120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-173154IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-176981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-178294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MAAAEAAAAV GKQQQKGGGG RGGGGGGPAP FLTKTNQMVE ESATDEVISW GKEGRSFVVW  60
KPVEFARDLL PLHFKHCNFS SFVRQLNTYG FRKVVPDRWE FANGNFRRGE QGLLSGIRRR  120
KATTPQSSKS CGSGVNVAFP PPLPPLPPEP SATTSSGNDR SSSSASSPPR ADITSENEQL  180
RKDNQTLTME LARARRHCEE LLGFLSRFLD VRQLDLRLLM QEDMRAAAGG VGGEQRVQEH  240
AREEKCVKLF GVLLDDTHGA ATRKRARCEE AAASERPIKM IRIGEPWVSV PSSGPARCGG  300
DN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B8e-21311245109Heat shock factor protein 2
5d8l_B8e-21311245109Heat shock factor protein 2
5d8l_D8e-21311245109Heat shock factor protein 2
5d8l_F8e-21311245109Heat shock factor protein 2
5d8l_H8e-21311245109Heat shock factor protein 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11826GGRGGGGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.271760.0callus| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329863910.0
Expression AtlasQ67TP9-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g28354.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g28354
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0614330.0AK061433.1 Oryza sativa Japonica Group cDNA clone:006-307-A01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611859.10.0PREDICTED: heat stress transcription factor B-1
SwissprotQ67TP90.0HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLF1DK710.0F1DK71_ORYSJ; HSF-BDB transcription factor (Fragment)
STRINGLOC_Os09g28354.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9617233
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.18e-50heat shock factor 4
Publications ? help Back to Top
  1. Baniwal SK, et al.
    Heat stress response in plants: a complex game with chaperones and more than twenty heat stress transcription factors.
    J. Biosci., 2004. 29(4): p. 471-87
    [PMID:15625403]
  2. Guo J, et al.
    Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis.
    J Genet Genomics, 2008. 35(2): p. 105-18
    [PMID:18407058]