PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g26420.2
Common NameLOC4347142, OJ1081_G10.25, Os09g0434500, OsJ_29481, OSNPB_090434500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 397aa    MW: 42625.8 Da    PI: 4.626
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g26420.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19135184255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a ++k++g
  LOC_Os09g26420.2 135 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 184
                       69*******.**********965...4*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.52E-32135193No hitNo description
Gene3DG3DSA:3.30.730.101.5E-32135193IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-22135193IPR016177DNA-binding domain
PROSITE profilePS5103223.933135192IPR001471AP2/ERF domain
SMARTSM003801.2E-36135198IPR001471AP2/ERF domain
PfamPF008476.6E-12136184IPR001471AP2/ERF domain
PRINTSPR003672.6E-11136147IPR001471AP2/ERF domain
PRINTSPR003672.6E-11158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020104anatomyleaf sheath
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MCGGAIISGF IPPSAAAAAA AAVAKKQQGR RVTADVLWPG MLRKGKAAAA EEDFEADFRE  60
FERGMSDDEA EGGGGEEEED DDDVVVVVPP PAAARFVVRA AAKAAPPTAD GMLTTKLVQH  120
DGPTARSAKH KRKNQYRGIR QRPWGKWAAE IRDPSKGVRV WLGTYNTAEE AARAYDAEAR  180
KIRGKKAKVN FPDEPAVAQK LSLKQNAAKQ EKLAPPLKTC GDDAFFQLNS SDNDLFAMLA  240
KVPAKPAEPV DLMPPVKPLA STETFEMNML SDTSSNSFGS SDFGWEDDTL TPDYTSVFVP  300
NAAMPAYGEP AYLTGGAPKR MRNNYGIAVP QGNGMPNLAQ NMPTFDPEMK YLPLPYVESS  360
SDESMDNLLQ NDATQDGASN EGIWSLDELL MAAGAY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-20134192160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-20135192563ATERF1
3gcc_A7e-20135192563ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.261780.0callus| flower| leaf| panicle| root| seed| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172260850.0
Expression AtlasQ69PH3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g26420.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g26420
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116900.0AK111690.1 Oryza sativa Japonica Group cDNA clone:J023008G03, full insert sequence.
GenBankAK1047230.0AK104723.1 Oryza sativa Japonica Group cDNA clone:001-038-B05, full insert sequence.
GenBankAK1045760.0AK104576.1 Oryza sativa Japonica Group cDNA clone:006-307-A07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611873.10.0PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLQ69PH30.0Q69PH3_ORYSJ; Os09g0434500 protein
STRINGLOC_Os09g26420.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.33e-30related to AP2 12
Publications ? help Back to Top
  1. Ye R,Yao QH,Xu ZH,Xue HW
    Development of an efficient method for the isolation of factors involved in gene transcription during rice embryo development.
    Plant J., 2004. 38(2): p. 348-57
    [PMID:15078336]