PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g25070.2
Common NameLOC4347070, Os09g0417800, OsJ_29379, OSNPB_090417800, P0014G10.42, P0701F11.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 280aa    MW: 29440.1 Da    PI: 7.7826
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g25070.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.66.1e-29104163159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dgy+WrKYGqK+ +++++pr+Y+rC++a +Cpvkkk++r+aed ++++ tYegeHnh 
  LOC_Os09g25070.2 104 VKDGYQWRKYGQKVTRDNPYPRAYFRCAFApSCPVKKKLQRCAEDRSMLVATYEGEHNHA 163
                       58***************************99****************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-2996163IPR003657WRKY domain
PROSITE profilePS5081125.30499165IPR003657WRKY domain
SuperFamilySSF1182907.98E-25102164IPR003657WRKY domain
SMARTSM007745.0E-33104164IPR003657WRKY domain
PfamPF031061.3E-23105162IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009620Biological Processresponse to fungus
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEENARLTRA LDAILAGHHA HQRALLAPSL SPPPPSATAR APSVSTSCAA REDAAPAVAA  60
AAASTACPSR QQPPTAEPRP KVRTVRVRAD AADATDANSM AETVKDGYQW RKYGQKVTRD  120
NPYPRAYFRC AFAPSCPVKK KLQRCAEDRS MLVATYEGEH NHALSTQTTE FVASGCTTSQ  180
HAGGSSSSPL PCSISINSSG RTITLDLTNQ AGSGSIASCG VEAAAVSGEL VTVLSPELRR  240
HLVEEVVQVL KNDAEFVEAV TNAVAARVVD QIPHIPVHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-2099164973WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.480820.0leaf| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO833202480.0
Expression AtlasQ6EPZ0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g25070.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g25070
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2981820.0DQ298182.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 62 mRNA, complete cds.
GenBankAK0678340.0AK067834.1 Oryza sativa Japonica Group cDNA clone:J013121C08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610755.10.0PREDICTED: probable WRKY transcription factor 40
TrEMBLB8BF910.0B8BF91_ORYSI; Putative uncharacterized protein
TrEMBLQ20DP80.0Q20DP8_ORYSJ; WRKY transcription factor 62
TrEMBLQ6EPZ00.0Q6EPZ0_ORYSJ; Os09g0417800 protein
TrEMBLQ6IEL90.0Q6IEL9_ORYSI; WRKY transcription factor 62
STRINGLOC_Os09g25070.10.0(Oryza sativa Japonica Group)
STRINGBGIOSGA029757-PA0.0(Oryza sativa Indica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.26e-38WRKY DNA-binding protein 18
Publications ? help Back to Top
  1. Ryu HS, et al.
    A comprehensive expression analysis of the WRKY gene superfamily in rice plants during defense response.
    Plant Cell Rep., 2006. 25(8): p. 836-47
    [PMID:16528562]
  2. Peng Y, et al.
    OsWRKY62 is a negative regulator of basal and Xa21-mediated defense against Xanthomonas oryzae pv. oryzae in rice.
    Mol Plant, 2008. 1(3): p. 446-58
    [PMID:19825552]