PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g25060.1
Common NameLOC4347069, Os09g0417600, OsJ_29378, OSNPB_090417600, P0014G10.39
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 328aa    MW: 34780.2 Da    PI: 8.0535
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g25060.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.31.8e-29165224159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dgy+WrKYGqK+ ++++ pr+Y+rC++a +Cpvkkkv+rsaed ++++ tYegeHnh+
  LOC_Os09g25060.1 165 VKDGYQWRKYGQKVTRDNPSPRAYFRCAFApSCPVKKKVQRSAEDSSLLVATYEGEHNHP 224
                       58***************************99****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.934160226IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-28161226IPR003657WRKY domain
SuperFamilySSF1182901.96E-25162226IPR003657WRKY domain
SMARTSM007742.8E-34165225IPR003657WRKY domain
PfamPF031062.9E-24166224IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009617Biological Processresponse to bacterium
GO:0009620Biological Processresponse to fungus
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009072anatomyplant ovary
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDAAWRGGVG CSPVCLDLCV GLSPVREPSA ARHELLDRPA GCRGGGDSKS MTNDEAKIVE  60
AKVTQMSEEN RRLTEVIARL YGGQIPRLGL DGSASPPRPV SPLSGKKRSR ESMETANSCD  120
ANSNRHQGGD ADHAESFAAD DGTCRRIKVS RVCRRIDPSD TSLVVKDGYQ WRKYGQKVTR  180
DNPSPRAYFR CAFAPSCPVK KKVQRSAEDS SLLVATYEGE HNHPHPSPRA GELPAAAGGA  240
GGSLPCSISI NSSGPTITLD LTKNGGAVQV VEAAHPPPPP DLKEVCREVA SPEFRTALVE  300
QMASALTSDP KFTGALAAAI LQKLPEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-201642261374WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.256060.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329783550.0
Expression AtlasQ6EPZ2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g25060.1
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g25060
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0599660.0AK059966.1 Oryza sativa Japonica Group cDNA clone:006-211-F11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610695.10.0PREDICTED: probable WRKY transcription factor 40
TrEMBLQ6EPZ20.0Q6EPZ2_ORYSJ; Os09g0417600 protein
STRINGLOC_Os09g25060.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
MonocotsOGMP66603552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.12e-54WRKY DNA-binding protein 40