PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g20350.1
Common NameLOC4346884, OJ1759_F09.23, Os09g0369000, P0564H06.29
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 292aa    MW: 30752.2 Da    PI: 6.671
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g20350.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.6e-21110159255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  LOC_Os09g20350.1 110 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 159
                       59******9.**********955...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.45E-30109169No hitNo description
Gene3DG3DSA:3.30.730.108.8E-33110169IPR001471AP2/ERF domain
SMARTSM003801.5E-35110173IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-23110169IPR016177DNA-binding domain
PROSITE profilePS5103223.354110167IPR001471AP2/ERF domain
PRINTSPR003672.5E-11111122IPR001471AP2/ERF domain
PfamPF008477.2E-15111159IPR001471AP2/ERF domain
PRINTSPR003672.5E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009071anatomyanther wall tapetum
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MAAAIDLSGE ELMRALEPFI RDASGSPPVC SQFSPTSPFS FPHAFAYGGG LAQQPELSPA  60
QMHYIQARLH LQRQAAQAGP LGPRAQPMKA SSSSASAAGA AATPPRPQKL YRGVRQRHWG  120
KWVAEIRLPR NRTRLWLGTF DTAEEAALAY DQAAYRLRGD AARLNFPDNA ASRGPLHASV  180
DAKLQTLCQN IAAAKNAKKS SVSASAAATS SAPTSNCSSP SSDDASSCLE SADSSPSLSP  240
SSAATTAETP ATVPEMQQLD FSEAPWDEAA AFALTKYPSY EIDWDSLLAA N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20109167463ATERF1
3gcc_A2e-20109167463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.119440.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172468020.0
Expression AtlasQ6H5L8-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g20350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g20350
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankAP0055800.0AP005580.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1759_F09.
GenBankAP0055250.0AP005525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0564H06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612138.10.0PREDICTED: ethylene-responsive transcription factor RAP2-13
SwissprotQ8H1E42e-64RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A0E0IIH60.0A0A0E0IIH6_ORYNI; Uncharacterized protein
TrEMBLQ6H5L80.0Q6H5L8_ORYSJ; AP2-EREBP transcription factor
STRINGLOC_Os09g20350.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.12e-34ERF family protein