PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g10980.1
Common NameLOC4346617, Os09g0282300, P0603H10.3, P0645D04.28
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 307aa    MW: 34750.5 Da    PI: 8.1925
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g10980.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00024155174120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       + Cp C k+Fsr  nL+ H+
  LOC_Os09g10980.1 155 FACPVCCKTFSRYNNLQMHM 174
                       78*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.19E-5142177No hitNo description
Gene3DG3DSA:3.30.160.601.5E-6155174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF138948.4E-4155177No hitNo description
PROSITE profilePS5015710.284155182IPR007087Zinc finger, C2H2
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
PROSITE profilePS501578.538259295IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MANPSKDHIF PNQRSLISQS SSPHNSLPKK EEIPLLSLLP SIHDHNKIHG CYKQEKEEEV  60
MEDVDISLQI GLPSPDPNSS VIDFAKSNPL GATATTSQEL DGDDDDDHKV EVEREEEEEA  120
ASDDLCLDYF SMGKLTKGKY WIPTPTQILI GPTHFACPVC CKTFSRYNNL QMHMWGHGSQ  180
YRRGPESLRG TQPAAMLRLP CFCCAAGCRN NVDHPRARPL KDFRTLQTHY KRKHCAKPFA  240
CRKCGKPLAV RGDWRTHEKN CGRRWHCACG SDFKHKRSLK DHIRAFGRDH RERPPPPPPH  300
PLLPLP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.829840.0panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6ENK1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g10980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g10980
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0900540.0AC090054.2 Oryza sativa chromosome 9 clone PAC0645D04, complete sequence.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankAP0067270.0AP006727.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0645D04.
GenBankAP0065270.0AP006527.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0603H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611093.10.0PREDICTED: zinc finger protein WIP2
SwissprotQ8W0311e-105ZWIP5_ARATH; Zinc finger protein WIP5
SwissprotQ9SVY11e-104ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0E0G5A70.0A0A0E0G5A7_ORYNI; Uncharacterized protein
TrEMBLQ6ENK10.0Q6ENK1_ORYSJ; Os09g0282300 protein
STRINGLOC_Os09g10980.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4101597
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.11e-100WIP domain protein 5