PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os09g01140.1
Common NameLOC4346364, Os09g0100800, OSJNBb0023E08.28, OSNPB_090100800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GeBP
Protein Properties Length: 398aa    MW: 44577.2 Da    PI: 10.337
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os09g01140.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57331.35.8e-1082169397
            DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                       fqr ws +De+++L ++   ++++gk       +++  ++++++ k  + + l +K+r + ++  ++ k+         +++hd+  ++ls+ 
  LOC_Os09g01140.1  82 FQRTWSPNDEVLILEAMAAHRQEHGKV--PTAAELFPVLNGRLDRKrLTYKKLADKLRTFMRRHGRDAKN------GPPTQAHDRRLYDLSRN 166
                       9************************65..56789999999999865278899********9999998888......556899*********** PP

            DUF573  95 iWg 97 
                       +W 
  LOC_Os09g01140.1 167 VWV 169
                       **6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.4E-1382168IPR007592Protein of unknown function DUF573
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MAPTLPVVPA HGEDKKKKKK KKKPLKPSQE EEEALPLPLP PPDRKRKKAS EPVNSPERAK  60
KKKTATPHEP PSAKQQKRPL PFQRTWSPND EVLILEAMAA HRQEHGKVPT AAELFPVLNG  120
RLDRKRLTYK KLADKLRTFM RRHGRDAKNG PPTQAHDRRL YDLSRNVWVS QTQPPNLSAN  180
ANSNIAGGQP NQHDAMPTAG KAFDKMRDSY PNLTQALLLL VGTDLEKALT AIDETKAQAL  240
DLKVSNLKKE LSEAVMESAT IQSTESSKIP CFPSTKLQPE FGAEIEKNFQ LEHLDEMKGT  300
QVKLARMEQE ILELKQNFLA FQSQQMADSK QQHDKSSAKG IICESSESGL RSIVADNNIL  360
CNTLQKEMVV QQKLSCGKTK EVTSKHRHPQ KLVVFPF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11323DKKKKKKKKKP
21422KKKKKKKKK
31622KKKKKKK
44347RKRKK
54562RKKASEPVNSPERAKKKK
65662ERAKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.533900.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329824090.0
Expression AtlasQ651G2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os09g01140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs09g01140
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0723860.0AK072386.1 Oryza sativa Japonica Group cDNA clone:J023081P06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610937.10.0PREDICTED: uncharacterized protein LOC4346364 isoform X4
TrEMBLQ651G20.0Q651G2_ORYSJ; Os09g0100800 protein
STRINGLOC_Os09g01140.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1362023
MonocotsOGMP139691113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.13e-11DNA-binding storekeeper protein-related transcriptional regulator