PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g44940.1
Common NameLOC4346341, Os08g0563400, OsJ_28302, OSNPB_080563400, P0543D10.31
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LBD
Protein Properties Length: 216aa    MW: 23239.2 Da    PI: 6.2822
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g44940.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601223.3e-3871071100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkC+k+Cv+apyf++eq +++fa++hk+FGasn +k+l +lp ++r +a+ ++ yeA+ar+rdP+yG+v++i++lqqq+ +l+a
  LOC_Os08g44940.1   7 PCGACKFLRRKCVKGCVFAPYFCHEQgAAHFAAIHKVFGASNASKILMHLPVSDRCEAAVTMSYEAQARLRDPIYGCVAHIFSLQQQVVSLQA 99 
                       7*************************89***************************************************************** PP

            DUF260  93 elallkee 100
                       +l++lk++
  LOC_Os08g44940.1 100 QLESLKAQ 107
                       ***99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.6956108IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-367105IPR004883Lateral organ boundaries, LOB
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MTGLGSPCGA CKFLRRKCVK GCVFAPYFCH EQGAAHFAAI HKVFGASNAS KILMHLPVSD  60
RCEAAVTMSY EAQARLRDPI YGCVAHIFSL QQQVVSLQAQ LESLKAQATQ GYGDGCSISS  120
PQNDSCGNML TSIVQDEQQF VGPTMASNSS VKNENHSYIA NGHLAPMSAQ SSQGFEAELC  180
MAEYSNTNPC CSVQGNWYHD MEDLQSVAFA YLNQA*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6ZBW8
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g44940.1
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g44940
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAP0045870.0AP004587.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0543D10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648252.11e-161PREDICTED: LOB domain-containing protein 29
SwissprotQ9SLB62e-64LBD17_ARATH; LOB domain-containing protein 17
TrEMBLA0A0D3H3A51e-161A0A0D3H3A5_9ORYZ; Uncharacterized protein
TrEMBLA2YY711e-161A2YY71_ORYSI; Putative uncharacterized protein
TrEMBLA0A0E0QMG81e-161A0A0E0QMG8_ORYRU; Uncharacterized protein
TrEMBLI1QKH31e-161I1QKH3_ORYGL; Uncharacterized protein
TrEMBLA0A0E0AZ211e-161A0A0E0AZ21_9ORYZ; Uncharacterized protein
TrEMBLQ6ZBW81e-161Q6ZBW8_ORYSJ; Os08g0563400 protein
TrEMBLA0A0E0IGE81e-161A0A0E0IGE8_ORYNI; Uncharacterized protein
STRINGBGIOSGA026473-PA1e-161(Oryza sativa Indica Group)
STRINGLOC_Os08g44940.11e-161(Oryza sativa Japonica Group)
STRINGORGLA08G0192400.11e-161(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40515100
MonocotsOGMP25013893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.12e-54lateral organ boundaries-domain 29