PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g44050.1
Common NameLOC4346276, OJ1125_C01.21, Os08g0554400, OSJNBb0011H15.47, OSNPB_080554400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 553aa    MW: 57262.7 Da    PI: 9.3848
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g44050.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-057092123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C+k F r  nL+ H r H
  LOC_Os08g44050.1 70 FVCEVCNKGFQREQNLQLHRRGH 92
                      89*******************88 PP

2zf-C2H213.20.00027146168123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k++  +s+ k H +t+
  LOC_Os08g44050.1 146 WKCDKCNKRYAVQSDWKAHSKTC 168
                       58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.82E-86992No hitNo description
Gene3DG3DSA:3.30.160.607.6E-66992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00417092IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0947092IPR007087Zinc finger, C2H2
PfamPF121713.6E-57092IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355140111141IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-5134167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.82E-8141166No hitNo description
SMARTSM00355110146166IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MAAASSAHYF GLGEPQMQQQ QQQPPLQNNA AAPVAATPPP KKKRNQPGNP NPDAEVVALS  60
PHTLLATNRF VCEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KNPKETRRRV YLCPEPSCVH  120
HDPSRALGDL TGIKKHYSRK HGEKKWKCDK CNKRYAVQSD WKAHSKTCGT REYRCDCGTL  180
FSRRDSFITH RAFCDALAQE SGRIMPPMGA ALYAAAGAGM AIGGLTGMAA SHQLQPFQDH  240
SSAITTAANA AAQFDHLMAT SSAAAGSPAF RAAQPTSSSS SPFYLGGGGD DGQAHTSLLH  300
GKPAFHGLMQ LPEQQGSNGG GLLNLSYFSG GNGGHHHHHQ EGRLVFPDQF NGVAAGNGAR  360
AGSGEHGNSG NNADSGSIFS GNMMGGGGGF SSLYSSSDQT VPPPQMSATA LLQKAAQMGA  420
TTSSGGAGSV NSLLRGLGSG GGGGALNGKP AGAAGFIMSG ESSSRSTASQ TAENESQLRE  480
LMMNTLSATG GGTGAGTVFV GGGFPGVDDG KLSTRDFLGV SGGAPGLQLR HGGAAGMGMA  540
GSLDQEMKWI NW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33142204365Zinc finger protein JACKDAW
5b3h_F1e-33142204365Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.615360.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166323790.0
Expression AtlasQ6Z3F1-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305|PubMed:22898356}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g44050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g44050
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0721280.0AK072128.1 Oryza sativa Japonica Group cDNA clone:J013124C13, full insert sequence.
GenBankAK0998300.0AK099830.1 Oryza sativa Japonica Group cDNA clone:J013105K20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650033.10.0protein indeterminate-domain 6, chloroplastic
RefseqXP_025883278.10.0protein indeterminate-domain 6, chloroplastic
RefseqXP_025883279.10.0protein indeterminate-domain 6, chloroplastic
RefseqXP_025883280.10.0protein indeterminate-domain 6, chloroplastic
RefseqXP_025883281.10.0protein indeterminate-domain 6, chloroplastic
SwissprotQ9ZUL31e-119IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLQ6Z3F10.0Q6Z3F1_ORYSJ; Os08g0554400 protein
STRINGOS08T0554400-020.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.21e-109C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]