PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g42400.1
Common NameLOC4346157, Os08g0535800, OsJ_28085, OSJNBa0033D24.25, OSNPB_080535800, P0665C04.6
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 233aa    MW: 24691.2 Da    PI: 10.2589
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g42400.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.67.7e-30191551128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk.atgkdke 91 
                       lppGfrFhPtdeelvv+yL++k+ g +l++  vi+++ +++k++Pwd+p +  +++ + yfF+ r  ++ +g+r++ +++ g Wk a g+dk+
  LOC_Os08g42400.1  19 LPPGFRFHPTDEELVVQYLRRKAFGLPLPA-AVIPDLhNLFKLDPWDIPGA--SSDGDKYFFAVRPPAA-RGRRQHVTASGGCWKpAGGRDKP 107
                       79****************************.8899998***********43..456789*****99875.68898889999****66678*** PP

               NAM  92 vlsk...kgelvglkktLvfy........kgrapkgektdWvmheyrl 128
                       v+++   +++lvg+kk +vf          + a  +    Wvmhey+l
  LOC_Os08g42400.1 108 VVVArcgGSHLVGVKKGMVFVprqgrkapAAAAAAAGGGCWVMHEYSL 155
                       99988988999**********8854433222333333667******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-4014179IPR003441NAC domain
PROSITE profilePS5100540.17619179IPR003441NAC domain
PfamPF023657.9E-2020155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MERAAAAAPV VVRHGGVVLP PGFRFHPTDE ELVVQYLRRK AFGLPLPAAV IPDLHNLFKL  60
DPWDIPGASS DGDKYFFAVR PPAARGRRQH VTASGGCWKP AGGRDKPVVV ARCGGSHLVG  120
VKKGMVFVPR QGRKAPAAAA AAAGGGCWVM HEYSLALPMH KKGCLAEAEE WVVCRIFQRS  180
SSGSRSPRRP DNDVRRTMPA VAELGRSPSP SSSSSQSSCV TSSSDQEEVS SG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-291918517171NO APICAL MERISTEM PROTEIN
1ut4_B2e-291918517171NO APICAL MERISTEM PROTEIN
1ut7_A2e-291918517171NO APICAL MERISTEM PROTEIN
1ut7_B2e-291918517171NO APICAL MERISTEM PROTEIN
3swm_A2e-291918520174NAC domain-containing protein 19
3swm_B2e-291918520174NAC domain-containing protein 19
3swm_C2e-291918520174NAC domain-containing protein 19
3swm_D2e-291918520174NAC domain-containing protein 19
3swp_A2e-291918520174NAC domain-containing protein 19
3swp_B2e-291918520174NAC domain-containing protein 19
3swp_C2e-291918520174NAC domain-containing protein 19
3swp_D2e-291918520174NAC domain-containing protein 19
4dul_A2e-291918517171NAC domain-containing protein 19
4dul_B2e-291918517171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.383511e-118callus| flower| leaf| panicle| root| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166314831e-118
Expression AtlasQ6Z1G9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g42400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g42400
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8469970.0EU846997.1 Oryza sativa Japonica Group clone KCS078C08 NAC4 protein mRNA, complete cds.
GenBankAK1047660.0AK104766.1 Oryza sativa Japonica Group cDNA clone:001-038-H11, full insert sequence.
GenBankAK0687760.0AK068776.1 Oryza sativa Japonica Group cDNA clone:J013160K11, full insert sequence.
GenBankAK0615430.0AK061543.1 Oryza sativa Japonica Group cDNA clone:006-311-A02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650414.11e-168PREDICTED: NAC domain-containing protein 18
TrEMBLQ6Z1G91e-168Q6Z1G9_ORYSJ; NAC4 protein
STRINGLOC_Os08g42400.11e-168(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1456244
MonocotsOGMP118183140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.18e-31NAC domain containing protein 83