PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g41030.1
Common NameLOC4346073, OJ1003_A09.37, OJ1081_B12.108, Os08g0521600, OSNPB_080521600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 190aa    MW: 20296.3 Da    PI: 9.1806
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g41030.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.4e-161365255
               AP2  2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55
                      g +GVr++  +grW+AeIr+p  +g +  +r ++g+f ++  Aa a++aa  +++g
  LOC_Os08g41030.1 13 GLRGVRRRL-WGRWAAEIRVP--RGhRAaARLWIGTFPSPAAAALAYDAALYCFHG 65
                      579***877.**********9..455447************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.1141377IPR001471AP2/ERF domain
PfamPF008471.9E-111465IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-141469IPR016177DNA-binding domain
PRINTSPR003672.0E-61425IPR001471AP2/ERF domain
SMARTSM003805.0E-141583IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-191578IPR001471AP2/ERF domain
PRINTSPR003672.0E-63955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MVPPAAHAPK NLGLRGVRRR LWGRWAAEIR VPRGHRAAAR LWIGTFPSPA AAALAYDAAL  60
YCFHGGAPPG NRAFNFPHAP RLRIDDRRRH ALTPGHVRAI AERYAHDVGS VLFRPLPPPP  120
PPVAAAAVPV FAAPAPPMAP APANHAADPY YCNEPDTTTD EDVMAAADRL LSMDIEEVAA  180
LIAIVQQGE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.555000.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329934170.0
Expression AtlasQ84QR5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g41030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g41030
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAP0055090.0AP005509.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1003_A09.
GenBankAP0038650.0AP003865.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1081_B12.
GenBankAK1082080.0AK108208.1 Oryza sativa Japonica Group cDNA clone:002-140-D07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649451.11e-131PREDICTED: ethylene-responsive transcription factor ERF015
TrEMBLA2YX621e-131A2YX62_ORYSI; Putative uncharacterized protein
TrEMBLA0A0E0QLD31e-131A0A0E0QLD3_ORYRU; Uncharacterized protein
TrEMBLI1QK981e-131I1QK98_ORYGL; Uncharacterized protein
TrEMBLA0A0E0AXT41e-131A0A0E0AXT4_9ORYZ; Uncharacterized protein
TrEMBLQ84QR51e-131Q84QR5_ORYSJ; Os08g0521600 protein
STRINGBGIOSGA029017-PA1e-130(Oryza sativa Indica Group)
STRINGLOC_Os08g41030.11e-130(Oryza sativa Japonica Group)
STRINGORGLA08G0184900.11e-130(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP54442555