PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g40030.1
Common NameLOC4346008, Os08g0511200, OSNPB_080511200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 341aa    MW: 36957.8 Da    PI: 7.2318
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g40030.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.31.2e-52251551128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                       lppGfrFhPtdeelv++yL++kv +  +    v i+evd++++ePw+Lp++++ +ekewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev
  LOC_Os08g40030.1  25 LPPGFRFHPTDEELVTFYLAAKVFNGACCG-GVdIAEVDLNRCEPWELPEAARMGEKEWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREV 116
                       79*************************888.455***************9888999************************************* PP

               NAM  93 lsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++   +g+l+g+kktLvfykgrap+gekt+Wv+heyrl
  LOC_Os08g40030.1 117 VAAaaaGGALIGMKKTLVFYKGRAPRGEKTKWVLHEYRL 155
                       *998888999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-6314178IPR003441NAC domain
PROSITE profilePS5100559.13525178IPR003441NAC domain
PfamPF023653.8E-2726155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGDALWEMLG EEMAAAAAAA GEHGLPPGFR FHPTDEELVT FYLAAKVFNG ACCGGVDIAE  60
VDLNRCEPWE LPEAARMGEK EWYFFSLRDR KYPTGLRTNR ATGAGYWKAT GKDREVVAAA  120
AAGGALIGMK KTLVFYKGRA PRGEKTKWVL HEYRLDGDFA AARRSTKEEW VICRIFHKVG  180
DQYSKLMMMK SPASYYLPVS HHHPSSIFHD LPPVPFPNPS LVPFHHDLPT SFHPPLLQHS  240
HANSKNSSSN NGGFVFPNEP NTTNSSDNHI SCNGAMAAAA AAAFPSFSCA STVTGKGGPP  300
AQLGVNAGQQ EPPPPTWMDA YLQHSGFIYE MGPPAVPRGA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-492517817165NO APICAL MERISTEM PROTEIN
1ut4_B3e-492517817165NO APICAL MERISTEM PROTEIN
1ut7_A3e-492517817165NO APICAL MERISTEM PROTEIN
1ut7_B3e-492517817165NO APICAL MERISTEM PROTEIN
3swm_A3e-492217817168NAC domain-containing protein 19
3swm_B3e-492217817168NAC domain-containing protein 19
3swm_C3e-492217817168NAC domain-containing protein 19
3swm_D3e-492217817168NAC domain-containing protein 19
3swp_A3e-492217817168NAC domain-containing protein 19
3swp_B3e-492217817168NAC domain-containing protein 19
3swp_C3e-492217817168NAC domain-containing protein 19
3swp_D3e-492217817168NAC domain-containing protein 19
4dul_A3e-492517817165NAC domain-containing protein 19
4dul_B3e-492517817165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.992030.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976088290.0
Expression AtlasA0A0P0XHX1-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g40030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g40030
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAP0060490.0AP006049.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648828.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8515e-87NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A0P0XHX10.0A0A0P0XHX1_ORYSJ; Os08g0511200 protein
TrEMBLQ84YJ10.0Q84YJ1_ORYSJ; Os08g0511200 protein
STRINGLOC_Os08g40030.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
MonocotsOGMP112373341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.19e-82NAC family protein