PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g38370.1
Common NameOs08g0491700, OsJ_026654, P0605H02.48, P0686H11.8
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 603aa    MW: 68418.8 Da    PI: 6.0954
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g38370.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21.1e-06517543127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +kt+ C+++ rtG+C+ Gd C +aH++
  LOC_Os08g38370.1 517 PKTVMCPDWCRTGHCSSGDGCEYAHSQ 543
                       79***********************97 PP

2zf-CCCH24.54.8e-08555577123
                       --S---SGGGGTS--TTTTT-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkF 23 
                       y+te+Cr+++++  C+yGd+C++
  LOC_Os08g38370.1 555 YRTEPCRYWLAGKGCWYGDKCRY 577
                       89*********99*********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.91E-8516548IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873516544IPR000571Zinc finger, CCCH-type
SMARTSM003560.011516543IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-11518547IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5553579IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-6553577IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018554582IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094554583IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-5555577IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061158Biological Process3'-UTR-mediated mRNA destabilization
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003730Molecular FunctionmRNA 3'-UTR binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    Send to blast
MKQEEDELAV DPGVGAVCDP VTKLRFEAIV CLLDRIPITL QQIDMFGQDV AFRTKRIGNI  60
EALLDFLKGS AAATWGARAG AGEPIDASSP ELHRLVEDAE TAYRDVRGLQ PRMVVQMPRV  120
FHKVCLPKLH QLLVIARRLL AQNVALRRLL LQPVGCDVSP MALAEAAVSS DDFERHGRNK  180
VVIDEFGYED LLRRRHTGHE SQNDADDAEQ HGREVREGEY EDLILMRHRD TSHELLQDDA  240
RRRRADAEAE QQGGDGEVRD EYEDYLCRQL GAVYSGPDQI YEHDMRGPEP AHSPNTPDQI  300
YVPCERMLPY PSNCDNAEDR IHMACLALKN LVKDMEGIYS PRGTLWQYLE DVISLAHALF  360
LENTKLHRFT DQASHQDLPL QPPQGFPFQQ QPQHDGYQQP GVPFQQPQQG GYYGHGQGIM  420
FQRGGYLQDV PFQHWQWQQG GYGQGFMFPQ AQHQGGYGQG FLSEQPLPGD PSFMNMQAPY  480
DGDGGVLFQK PQHYHHGHVP SEKGAIQAKG KQKMREPKTV MCPDWCRTGH CSSGDGCEYA  540
HSQDELRVID ARPKYRTEPC RYWLAGKGCW YGDKCRYKQH RLAREPLYVD PFLTGHELRN  600
KT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.586846e-77leaf| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO296716156e-77
Expression AtlasA3BUD2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g38370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g38370
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAP0047620.0AP004762.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0686H11.
GenBankAP0046200.0AP004620.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0605H02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649324.10.0PREDICTED: putative zinc finger CCCH domain-containing protein 57
SwissprotA3BUD20.0C3H57_ORYSJ; Putative zinc finger CCCH domain-containing protein 57
TrEMBLA2YWI90.0A2YWI9_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA028898-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os08g38370.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20581636
MonocotsOGMP2025277
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-13C3H family protein
Publications ? help Back to Top
  1. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]