PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g38210.4
Common NameOs08g0490000, OSNPB_080490000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 343aa    MW: 37565.2 Da    PI: 7.0278
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g38210.4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.35.5e-1857106255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       r +h++ E+rRR++iN++f+ Lr+llP++    ++K +Ka+ L +++eYI+ Lq
  LOC_Os08g38210.4  57 RSKHSATEQRRRSKINDRFQLLRDLLPHN----DQKRDKASFLLEVIEYIRFLQ 106
                       889*************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.9E-2454127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.93955105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-1955130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-1557110No hitNo description
PfamPF000102.3E-1557106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1361111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDAGSRSSGG AGFDDDDGHA ARREVSSSLK ELTVRVEGKG GSCSGSAGTD QMPNTPRSKH  60
SATEQRRRSK INDRFQLLRD LLPHNDQKRD KASFLLEVIE YIRFLQEKVQ KYEVSYPEWN  120
QENAKVVPWT NIYFRSSWKN AQNKGQVPAD HSPDPPELLK NGSPYMFPFT GNSDNNNAVE  180
TAAASGAQDQ AETDPMSRVS YRSVDTPSPN NVADKVTSQP HAQLVRPSPA ENHTVNCDKL  240
NNSDLAIDEG TISLSSQYSQ ELLNKLNHAL ENSGIDLSQA SISVQINLGK RAMKRSTPAA  300
TSTSKELTDP ASNSQAMGRQ LRLGDGAEEH RQASKRHKSD NS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.50930.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329853920.0
Expression AtlasA0A0P0XHD5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g38210.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g38210
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1001830.0AK100183.1 Oryza sativa Japonica Group cDNA clone:J023030J22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650490.10.0PREDICTED: transcription factor BIM2 isoform X1
RefseqXP_015650492.10.0PREDICTED: transcription factor BIM2 isoform X2
TrEMBLA0A0P0XHD50.0A0A0P0XHD5_ORYSJ; Os08g0490000 protein (Fragment)
STRINGBGIOSGA028888-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os08g38210.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-60BES1-interacting Myc-like protein 2