PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g37904.5
Common NameLOC4345879, Os08g0485600, OsJ_27723, OSNPB_080485600, P0419H09.37-1, P0481F05.7-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 699aa    MW: 75829.9 Da    PI: 7.729
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g37904.5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014361383123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp C+k+F  +s +  Hi +H
  LOC_Os08g37904.5 361 FECPVCNKTFEEQSRYFGHIGSH 383
                       89*****************9777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509829.693186259IPR001739Methyl-CpG DNA binding
SuperFamilySSF541711.86E-6190241IPR016177DNA-binding domain
PfamPF014297.2E-5196239IPR001739Methyl-CpG DNA binding
SMARTSM003550.41312335IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280314335IPR007087Zinc finger, C2H2
PROSITE profilePS501579.681361388IPR007087Zinc finger, C2H2
SMARTSM003550.018361383IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280363383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
METEVFPVVD LRVLTQSDLD ELAAASAHAV DPRSSCPDRA VFNESAGSRK QTFSRVRFVP  60
AAAAAAAAAS ASAAAAAKLP RGNDKEDSFI AYHLRRLFAP DDPSLIENPS FPQTQTLARS  120
PSPDPDQLTT NSRGVSVDLV SLSRLADPYD AELGKRTARM TTEEELMGFI SSLAGQWVNQ  180
RMRRKLVDAS FFGDHLPSGW RLQLGIERKD RKAWVNCFSY VSPKGQSFAT CQEVSAYLMS  240
LLGYPEFKTD NIEYGSTQQH GLCADDGVNV LGVQHQIGTS MDSQSNLPVA SATFYSHSRD  300
QDETVADDIN SYECQQCNLT FHGQSAYAHH LITFHKVSSK RRKSNKVSKF GEPVIGKDGK  360
FECPVCNKTF EEQSRYFGHI GSHAKYQGLT PEAFLQTFSG KVGNNSFAGL SSSLQVLVGS  420
PQLNEKTTAC EARSQHHDCS TKHGGNSTRE AQSTWTYRNN EMNCADRTVP RTVPQPNDHE  480
DCRVSGFAEA TNFNDQAGRH QGFRPFSFGT TNHCQGQIID HAVAASKHAE VNNSMKSRDV  540
NLNSRLNTIS FPIATANNET STALNDVNRS CITGKGFSGS FSNNDGAASI VLPSSGLNNK  600
ISSSLGVADR SSIAARSFNA GYVYENGASE ANNIGNKNNT MVYQTSLAMR PLSPGKQSSG  660
VASRRTAAVV SERHGGQVVR HPRTASSVYM PEQGPGWL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.805890.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329782610.0
Expression AtlasQ6YTR7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g37904.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g37904
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0682430.0AK068243.1 Oryza sativa Japonica Group cDNA clone:J013149G12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650343.10.0PREDICTED: uncharacterized protein LOC4345879 isoform X3
TrEMBLQ6YTR70.0Q6YTR7_ORYSJ; Os08g0485600 protein
STRINGLOC_Os08g37904.10.0(Oryza sativa Japonica Group)