PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g36920.1
Common NameOsJ_27650
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 283aa    MW: 30076.3 Da    PI: 6.0545
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g36920.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.9e-20138187255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp+    r  r +lg+f+taeeAa+a+++a+ +++g
  LOC_Os08g36920.1 138 KYRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAARAYDRAAVEFRG 187
                       8********.**********82....48***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.64E-23138196IPR016177DNA-binding domain
SMARTSM003804.1E-38138201IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-32138195IPR001471AP2/ERF domain
PfamPF008471.4E-13138187IPR001471AP2/ERF domain
PROSITE profilePS5103225.277138195IPR001471AP2/ERF domain
PRINTSPR003671.8E-11139150IPR001471AP2/ERF domain
CDDcd000186.82E-29141195No hitNo description
PRINTSPR003671.8E-11161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MTNRISAMGG NQEYMIRFDG HIDDASPSSA TAEPPPPLPP PRPFAGRAIS AEREHSVIVA  60
TLLHVISGYR TPPPEVFPAA RAEVCGVCGM DQCLGCEFFA GESGVVSFDG AEKVAAAAAA  120
AAAGAAAGQR RRRKKKNKYR GVRQRPWGKW AAEIRDPRRA VRKWLGTFDT AEEAARAYDR  180
AAVEFRGPRA KLNFPFPEQL SAHDDSNGDA SAAAKSDTLS PSPRSADADE QVEHTRWPQG  240
GGGGGGGGGG ETGDQLWEGL QDLMQLDEGG LSWFPQSSDS WN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-21135196264ATERF1
3gcc_A6e-21135196264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129135RRRRKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.158490.0stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA3BU22
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g36920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g36920
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAP0043990.0AP004399.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0451G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649367.10.0PREDICTED: ethylene-responsive transcription factor ERF109
SwissprotQ9SZ064e-32EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A0E0IDA20.0A0A0E0IDA2_ORYNI; Uncharacterized protein
TrEMBLA3BU220.0A3BU22_ORYSJ; Uncharacterized protein
STRINGLOC_Os08g36920.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.12e-23redox responsive transcription factor 1