PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g36450.1
Common NameLOC4345794, Os08g0467600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GeBP
Protein Properties Length: 455aa    MW: 48578.4 Da    PI: 10.4511
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g36450.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573100.12e-31188287298
            DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifel 91 
                       ++ r+w+ +De+++L++li+++ak+g+   +s+d+ ++++++++++s+k+s++ql++K+rrLK+K++   ++ +ksg++p++ +ehd++++el
  LOC_Os08g36450.1 188 RPPRVWNPQDEVTILRALISYRAKNGAlpGSSQDTGKLHNMIRGQLSVKASTTQLSDKVRRLKHKYNLILTRvTKSGRDPDLPTEHDREVYEL 280
                       578************************888999*************************************99899****************** PP

            DUF573  92 skkiWgs 98 
                       skk+Wg+
  LOC_Os08g36450.1 281 SKKVWGT 287
                       *****95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.4E-28190286IPR007592Protein of unknown function DUF573
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MAPKRPAAAS GSASEASDCE AGGAGRRRSP SRSRSPSRSA SPSRSRSKTP PHNAAVLSST  60
PASAAVDFVA ASDSDAGADA DARLASPRRS RERSPRLHSD SDNSAAATAE AAEAAAAAAF  120
DDGDDEGNAT PPPRSRRSSR VEATGVKPIS SRPMDASRRP AAASSQSQRR SKRPRSSPTQ  180
HSPEQHKRPP RVWNPQDEVT ILRALISYRA KNGALPGSSQ DTGKLHNMIR GQLSVKASTT  240
QLSDKVRRLK HKYNLILTRV TKSGRDPDLP TEHDREVYEL SKKVWGTKSG GAGAGSGGGG  300
GGGGGRVYEN AEVVQSDEEQ GSRDDSDEDM ESGWDDRDHR NRRLKAIVVA NGNGNAVTGG  360
RSVHGNGSGK GDVADKGKDM YPYLWEAVEE LSKEHPSGTA FRKAFGVLDG SRARAMEEKL  420
NRFRLSEIRQ QLRRMDLMKE TIKMVLDALE GSDL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.805260.0callus| panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ0J546
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g36450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g36450
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAP0064610.0AP006461.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0104B02.
GenBankAP0045850.0AP004585.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0470B03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648426.10.0PREDICTED: mediator-associated protein 1
TrEMBLQ0J5460.0Q0J546_ORYSJ; Os08g0467600 protein
STRINGLOC_Os08g36450.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1071349
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.11e-14DNA-binding storekeeper protein-related transcriptional regulator