PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g34960.1
Common NameLOC107275352, OJ1005_H01.28, Os08g0450900, OSNPB_080450900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB
Protein Properties Length: 201aa    MW: 21605.3 Da    PI: 6.5138
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g34960.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.1e-151460148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      + +WT+eEde l +av+++   +W+ Ia  ++ +R +k+c++rw ++l
  LOC_Os08g34960.1 14 KTPWTQEEDEALRRAVREHRRQNWAEIALALP-RRGPKSCRLRWCQHL 60
                      579*****************************.***********9986 PP

2Myb_DNA-binding42.71.3e-1368109346
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +T+eEd +++   + +G++ W+tIar+++ gR ++ +k+rw++
  LOC_Os08g34960.1  68 VFTAEEDAIILAQQRVHGNK-WATIARCLP-GRYDNAVKNRWNS 109
                       59******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.271964IPR017930Myb domain
SMARTSM007172.4E-151362IPR001005SANT/Myb domain
SuperFamilySSF466892.04E-2713107IPR009057Homeodomain-like
PfamPF002491.1E-141460IPR001005SANT/Myb domain
CDDcd001672.39E-131660No hitNo description
Gene3DG3DSA:1.10.10.601.2E-211667IPR009057Homeodomain-like
SMARTSM007173.2E-1065113IPR001005SANT/Myb domain
PROSITE profilePS5129415.71767115IPR017930Myb domain
PfamPF002493.2E-1068109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-1968113IPR009057Homeodomain-like
CDDcd001678.62E-869108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAADGGDGSG GGRKTPWTQE EDEALRRAVR EHRRQNWAEI ALALPRRGPK SCRLRWCQHL  60
SPELDSRVFT AEEDAIILAQ QRVHGNKWAT IARCLPGRYD NAVKNRWNSA LRKLLQVQHA  120
SGAGSPPAAA AAAAGDDRDD APVCLQLFPA RAGGVKEAGL FAGEKDVEEE DVATSLTLGL  180
PVLCEAELEL RLGPAWPATA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A5e-27141182106MYB3
3zqc_D5e-27141182106MYB3
3zqc_G5e-27141182106MYB3
3zqc_J5e-27141182106MYB3
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6ZLF1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g34960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g34960
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAP0037980.0AP003798.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1005_H01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649306.11e-143PREDICTED: transcription factor MYB44-like
TrEMBLQ6ZLF11e-143Q6ZLF1_ORYSJ; Os08g0450900 protein
STRINGLOC_Os08g34960.11e-142(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
MonocotsOGMP49603465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.12e-36myb domain protein 77