PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g33590.1
Common NameLOC4345648, Os08g0432800, OSNPB_080432800, P0431A03.9
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 346aa    MW: 36047.4 Da    PI: 6.2758
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g33590.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.91e-14123169354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r+h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L +++e++k+L
  LOC_Os08g33590.1 123 RSHSEAERRRRQRINGHLARLRSLLPNT-----TKTDKASLLAEVIEHVKEL 169
                       78*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.066120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.54E-14123172No hitNo description
PfamPF000104.0E-12123169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-15124178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-15124178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-14126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2609.6E-4218269No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MWEAVGGGDG TALLPWPGSA AAAPLYMPPA AAAAAPFAAG EQLPVEQPFY FDGGGGVAGH  60
NHHPHHHQYG MEAPPPMTMM QMGGGGSSSS RMVVSGLLGT LQAELGRMTA KEIMDAKALA  120
ASRSHSEAER RRRQRINGHL ARLRSLLPNT TKTDKASLLA EVIEHVKELK RQTSAMMEDG  180
AAGGEAAAAP VVLLPTEDDE LEVDAAADEG GRLVARASLC CEDRADLIPG IARALAALRL  240
RARRAEIATL GGRVRSVLLI AAVEEEDPDE AGNDDDGEHG YGVAASHRRH ELVASIHEAL  300
RGVMNRKAAS SDTSSSGAGG GGGSIKRQRM ISAHDQQGSF NSSGW*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329948250.0
Expression AtlasQ6ZA99-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g33590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g33590
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096160.0AK109616.1 Oryza sativa Japonica Group cDNA clone:002-137-H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648851.10.0PREDICTED: transcription factor bHLH30
TrEMBLQ6ZA990.0Q6ZA99_ORYSJ; DNA-binding protein-like
STRINGLOC_Os08g33590.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37715106
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.17e-39bHLH family protein