PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g33270.1
Common NameP0479C08.125
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 1137aa    MW: 131867 Da    PI: 7.3166
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g33270.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR140.77.7e-13393442147
              FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk 47 
                       +f+n+YA  +GFs+++++++++   krnge+t+ tf+C+++gk+++++k+
  LOC_Os08g33270.1 393 EFFNFYALLAGFSIVRAHNYHTtskKRNGEVTRVTFRCNRQGKPTSQSKS 442
                       6*******************998999*******************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.0E-11393442IPR004330FAR1 DNA binding domain
PfamPF105511.1E-34582676IPR018289MULE transposase domain
PROSITE profilePS5096610.262867903IPR007527Zinc finger, SWIM-type
PfamPF044341.4E-4871903IPR007527Zinc finger, SWIM-type
SMARTSM005751.9E-4878905IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1137 aa     Download sequence    Send to blast
MELGEEKEER KRGSKSQMEG ESTMSESKSS SRGKKKSKTT FEQKVEIHTK ETQNLENTKK  60
KQEEGKIKRN KKAPVQGVIQ KDKECKSSKE IEGKNIGGIQ KEKQSKSSME IEEKESDIKK  120
HFKALTEMDT EIISQSNLTE INTAMLSSGI TIELSEGERS IQSKQIQNMK QSILTEYKTT  180
FVNSGIIGNE VGRSNALDEP NTDHIGLGAE DATVEKQSMD NSASMTEAFV DYSNKYSYDE  240
LSLFGSMNSV ANMSYTSLME QIISSQPTIS DMQEQNSAHS IFVASPSAFQ EDESNEEDAM  300
DNWNLDIFNL LDGEKEPSSM DNHRCTSVQG TRDDDNNPND NSETNQQELI EEDINIFVEN  360
EQEEATKGNN AAIDSRYIPR VGTQFKNITE AHEFFNFYAL LAGFSIVRAH NYHTTSKKRN  420
GEVTRVTFRC NRQGKPTSQS KSRNEIWNIS RVQLDHNHQL SPRDEVRFLK SHKHMTTEEK  480
MLIRTLKECN IPTRHMIVIL SVLRGGLTSL PYTKKDISNV RTTINKETSS NDIMKTLEFF  540
RRKKEKDPHF FYEFDLDESK KVKNLFWTDG RSREWYEKYG DVVSFDTTYF TNKYNLPFAP  600
FVGIYGHGNT IVFGCAFLHD ETSETFKWLF RTFLKAMSQK EPKTIITDQD GAMRSAIAQV  660
FQNAKHRNCF FHIVKKAFNL SGNLLKAKEG LYDEYEDIIN NSVTEEEFEY LWQEMIDSFE  720
VQHINFLKHM WSIRKRFIPV YFKGDFCPFI KSTALSEGTN SRFKNNVGPQ YSITNFMIEY  780
ERVMDTIQNL EQFDDHISRT KKPSKLWSHY YIEYQAMRMY NRKIFIKFQV ELKRTTRFQI  840
NEVEKFKTYE VFLALNQNIQ VIRRRKYLVI VDLEKEDFNC ICSKFEKDGL LCCHVLKVML  900
HLNAMKIPEK YIIERWTKKE YKGLEGKGNG NIPLAQSSIL RFNILSRKSA EIASNGSKSY  960
ETFQFVVEEM DKIAKQLELL CSNKDAEQEI NDSDPNAEDN LNSHEKGNQQ SEENIDEILL  1020
DLDIAKSKGR PTQRYKTIRE EIQQKELYHC SHCQRTDHTF PTCPLKHVEF DLPRKKRRKV  1080
KNTREQDGVE QKKKDVSNKR KDLQQDISQE KHNSGAELEG KKKRNSSSSK RGGTKE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1540545RRKKEK
210741078KKRRK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8H3L3
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g33270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g33270
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAP0046170.0AP004617.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0479C08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649296.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLQ8H3L30.0Q8H3L3_ORYSJ; Putative far-red impaired response protein
STRINGLOC_Os08g33270.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-88FAR1-related sequence 5