PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g32440.1
Common NameOsJ_27341
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 457aa    MW: 52466.2 Da    PI: 8.266
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g32440.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.91e-2024110289
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                       f+ +Y+ ++GF+vrk+ ++ sk++g++t+ ++vC +eg+r++++++ + +r  ra trt+Cka++++++++  g++ev+++ leHnH+l
  LOC_Os08g32440.1  24 FWVAYGGRTGFDVRKRCTNVSKMDGKVTSCRYVCFNEGHRTKRQTE-HVTRCFRADTRTDCKAQMVISLDRgAGNYEVIDV-LEHNHPL 110
                       99*****************************************999.9999********************9*******97.89***99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-1624110IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MAEVDTKLLE VGLRFKNPYK GWLFWVAYGG RTGFDVRKRC TNVSKMDGKV TSCRYVCFNE  60
GHRTKRQTEH VTRCFRADTR TDCKAQMVIS LDRGAGNYEV IDVLEHNHPL HLPETFHLMK  120
SQRKISKLQA FEIETADDSS IRPKAAHELA TRQVGGPLNL SYSCRDRQNY LQSRRQRELA  180
FGQNAVKHLS PVKGKEDDEG EEEDEGEEES HVRFLGVRST QLSESFNNAL KNHLKSDFDI  240
IRFLKHFERS VQDKRDKELQ SEFEARKKLP RRLMCTPMLV RANQVYTPVI FEAFQSEYER  300
SMAACARVLD GEHRYAVVVG NLLGELEEKL NLLSAGGTHE PYEDKENIDP NAQHGDDLLS  360
ATQLNKKEVQ SNKSRRIRTW IDKLRKGKRN NPKSAKPTKK GVKKNDALQP QVQVKDDGSH  420
KERDVELQQY NIISDFTHLV TAPSCDDDIL CDQDLF*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA3BT73
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g32440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g32440
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126160.0CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA3BT730.0A3BT73_ORYSJ; Uncharacterized protein
STRINGLOC_Os08g32440.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-13FAR1-related sequence 5