PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g31580.1
Common NameLOC4345541, Os08g0408500, OsJ_27264, OSNPB_080408500, P0042B03.7, P0453D01.40
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 281aa    MW: 29524.9 Da    PI: 7.7621
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g31580.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.7e-20103152255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa  +++a+ +l+g
  LOC_Os08g31580.1 103 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALTYDQAAYRLRG 152
                       59******9.**********955...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.01E-29102162No hitNo description
PROSITE profilePS5103223.024103160IPR001471AP2/ERF domain
SMARTSM003805.0E-34103166IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-22103162IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.7E-32103162IPR001471AP2/ERF domain
PRINTSPR003671.0E-10104115IPR001471AP2/ERF domain
PfamPF008475.5E-14104152IPR001471AP2/ERF domain
PRINTSPR003671.0E-10126142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAAAIEGNLM RALGEAPSPQ MQKIAPPPFH PGLPPAPANF SSAGVHGFHY MGPAQLSPAQ  60
IQRVQAQLHM QRQAQSGLGP RAQPMKPASA AAPAAAAARA QKLYRGVRQR HWGKWVAEIR  120
LPRNRTRLWL GTFDTAEEAA LTYDQAAYRL RGDAARLNFP DNAASRGPLD AAVDAKLQAI  180
CDTIAASKNA SSRSRGGAGR AMPINAPLVA AASSSSGSDH SGGGDDGGSE TSSSSAAASP  240
LAEMEQLDFS EVPWDEAEGF ALTKYPSYEI DWDSLLNNNN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19102160463ATERF1
3gcc_A1e-19102160463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.55990.0callus| flower| leaf| panicle| root| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2844318030.0
Expression AtlasQ6Z9V4-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g31580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g31580
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9402210.0FJ940221.1 Oryza sativa Japonica Group clone KCS046C03 AP domain DRE binding factor mRNA, complete cds.
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAP0046910.0AP004691.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0453D01.
GenBankAP0046580.0AP004658.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0042B03.
GenBankAK1057250.0AK105725.1 Oryza sativa Japonica Group cDNA clone:001-201-G08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650910.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4
TrEMBLA0A0E0QIV20.0A0A0E0QIV2_ORYRU; Uncharacterized protein
TrEMBLQ6Z9V40.0Q6Z9V4_ORYSJ; AP domain DRE binding factor
STRINGLOC_Os08g31580.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-51related to AP2 4