PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g28214.5
Common NameOJ1770_H03.18, Os08g0369600, OSJNBa0091C18.40, OSNPB_080369600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family CPP
Protein Properties Length: 370aa    MW: 40429.7 Da    PI: 8.7441
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g28214.5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR37.83.8e-12171209342
               TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                       k +C+Ck skClk+YCeCf++g++C   C+C++C+N+ ++
  LOC_Os08g28214.5 171 KTNCSCKYSKCLKLYCECFEKGRYCIG-CNCTNCCNNVNH 209
                       789************************.********9875 PP

2TCR48.22.2e-15252292141
               TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                       k++kgC+Ck+++ClkkYCeCf+a ++Cse+C+C++CkN ++
  LOC_Os08g28214.5 252 KHTKGCKCKRTECLKKYCECFKASVFCSENCRCTGCKNYKS 292
                       589***********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.4E-7169209IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.401170292IPR005172CRC domain
PfamPF036382.7E-8172206IPR005172CRC domain
SMARTSM011147.4E-16252293IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.2E-12255290IPR005172CRC domain
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MEKPLQLCPG SVKIDFASAS YAGKADIAAT AAALLHALGP PRTPPCYQLP LAKVNSSLPL  60
WPPVICPSTF AQKRPMSLPS PPPAKKLQVQ QSSSMLPQDF PKLEVLPVEK PTKLQVRRSP  120
QHVSPALKQD SPKMERPLLP RPATFIDVML SSQKPSSEMW SETKDVTLTR KTNCSCKYSK  180
CLKLYCECFE KGRYCIGCNC TNCCNNVNHE NARQDAINVA LERNPAAFMP KVLNSTAHNC  240
ESKAAEGDIV GKHTKGCKCK RTECLKKYCE CFKASVFCSE NCRCTGCKNY KSNADRISQK  300
NTVHAHHVQN PASSGMVGQS VIIFHAAEND SSLSLAASVS DHSINNNTSH VILLQHTFQI  360
CHGPCFLIG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.532330.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329815160.0
Expression AtlasQ6Z253-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g28214.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g28214
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0714930.0AK071493.1 Oryza sativa Japonica Group cDNA clone:J023097M11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650561.10.0PREDICTED: protein tesmin/TSO1-like CXC 6 isoform X1
RefseqXP_015650562.10.0PREDICTED: protein tesmin/TSO1-like CXC 6 isoform X1
RefseqXP_015650563.10.0PREDICTED: protein tesmin/TSO1-like CXC 6 isoform X1
RefseqXP_015650564.10.0PREDICTED: protein tesmin/TSO1-like CXC 6 isoform X2
TrEMBLQ6Z2530.0Q6Z253_ORYSJ; Os08g0369600 protein
STRINGLOC_Os08g28214.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.12e-38Tesmin/TSO1-like CXC domain-containing protein