PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g27220.1
Common NameOJ1014_E02.25, OsJ_27050
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 313aa    MW: 33358.9 Da    PI: 9.7012
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g27220.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.64.2e-10117158550
               AP2   5 GVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaar 50 
                       GV+++   grW++  rd       + r +lg+f ++eeA++a++a+ 
  LOC_Os08g27220.1 117 GVYQRQ-PGRWAVDFRD----SqLKVRQWLGTFPSEEEARAAYDAFE 158
                       9**998.9******888....23459*******************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.484114175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-11117162IPR001471AP2/ERF domain
SMARTSM003808.0E-4117164IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-9117162IPR016177DNA-binding domain
PfamPF008472.0E-6117158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MVAFRRIRIS YSDPDATDSD SDSDSADAGD HDISSRSSRT NAAARRKVIV ISLSRKKGRS  60
LSQSGRHYRR RRSEIPAAAA KAVEAEDWPS SSDGMRRGAV AAARSASAAA KKGSRGGVYQ  120
RQPGRWAVDF RDSQLKVRQW LGTFPSEEEA RAAYDAFEVQ VRASLSRGGA GASSPAVAIA  180
PSPARVKIQL PAPRRASGRR KKTQTTATVT TTTTTESLSQ VTASSASPSS KEAPPPSSSA  240
SAATPPPLNP PPFVVDTFLG EDDHLAADED DRFGFGLADL GHLPLPFLDD NDMDFKLSDS  300
DDLSFLFDIG FM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15471RKKGRSLSQSGRHYRRRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6YY97
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g27220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g27220
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAP0056280.0AP005628.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1014_E02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649267.17e-94PREDICTED: ethylene-responsive transcription factor ERF118-like
TrEMBLQ6YY970.0Q6YY97_ORYSJ; Uncharacterized protein
STRINGLOC_Os08g27220.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1702133
MonocotsOGMP140032023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-06related to AP2 11