PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g17640.1
Common NameOSJNBa0091M20.24
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 307aa    MW: 30612.2 Da    PI: 8.6645
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g17640.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012107129123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++C + F ++  L  H++ H
  LOC_Os08g17640.1 107 FKCNYCQRKFYTSQALGGHQNAH 129
                       89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.26E-6104134No hitNo description
PROSITE profilePS5015711.572107134IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MASSSQTTVS MEVAMKVEGS GGGGGDGEEG EVVAKKEEEV AAAAAAMELD LLGALRAEEV  60
MPAEKGKAAV VMVGEAVAPS VEERASAVAA AAANGGGGGG EARRRLFKCN YCQRKFYTSQ  120
ALGGHQNAHK RERSLAKRGA AVAAAAAAAG RGLYGFGDPF VPHHLRFRSL WPYPAAAGAA  180
RTTPFLGRGS ASAAAAAAAP AAPFYGAVHH GWSTQPPSSL QGIAARHAAA ERPVYPADAF  240
GYGAGSSSSR ATGAPASAGL RWAEGGGSGT IHSAAAAAAA GEQHTAAEVK AQEEMSSSKI  300
DLTLKL*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ6Z1L5
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g17640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g17640
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAP0054150.0AP005415.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0091M20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649245.11e-109PREDICTED: dynein assembly factor 3, axonemal homolog
TrEMBLQ6Z1L50.0Q6Z1L5_ORYSJ; Putative uncharacterized protein
STRINGLOC_Os08g17640.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8215137
MonocotsOGMP130642230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.16e-17zinc-finger protein 1