PlantTFDB - Plant Transcription Factor Databases @ CBI, PKU
PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information? help Back to Top
TF ID LOC_Os08g06240.1
Common NameLOC4344711, Os08g0159000, OsJ_26118, OSNPB_080159000, P0498E12.114
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family MYB_related
Protein Properties Length: 326aa    MW: 33783.5 Da    PI: 6.9551
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g06240.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.4e-07263306243
                       SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                       g+W++ +d  l++a k+++++   +W+++a  ++ g+t   c  r
  LOC_Os08g06240.1 263 GSWSAGDDRALLNALKEFPKDtamRWEKVAVAVP-GKTKAACMKR 306
                       79********************************.*******987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.066169222IPR001005SANT/Myb domain
PROSITE profilePS500905.877171212IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.2E-5171206IPR009057Homeodomain-like
SuperFamilySSF466893.59E-7171214IPR009057Homeodomain-like
CDDcd001675.61E-5172214No hitNo description
PfamPF139215.5E-5173213No hitNo description
SuperFamilySSF466892.62E-9261311IPR009057Homeodomain-like
SMARTSM007172.3E-6261313IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-5262313IPR009057Homeodomain-like
PROSITE profilePS500906.771263311IPR017877Myb-like domain
PfamPF002495.7E-6263306IPR001005SANT/Myb domain
CDDcd001676.92E-5269311No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEFIDDDWDY QPRARVIHSR SNANSNGATT ASSSQPTRSL PHTAACAAAA VALLAAAYYL  60
LPDYQVLASV VVWVASSLLL APFAPSSATG GDVSVGRGDP LPEQEPVEEP VSDPAPTSRR  120
GRRQSSSSNP TPPPPKPSDP IAPPPPRHAA AAAAAAATAV SDGGEAVEDA GEWTDQEMDI  180
LRRQMVKHPA GEPQRWEKIA AAFGGRRTPE SVIRAAKSGG GAAAAGASFD QFLRKRKPLD  240
PRSEATDAGS GNAGGGGGES GDGSWSAGDD RALLNALKEF PKDTAMRWEK VAVAVPGKTK  300
AACMKRVTEL KRDFRSSKAA SEAAP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232237LRKRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.112380.0leaf| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329836400.0
Expression AtlasQ84PV0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g06240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g06240
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149640.0AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAP0046980.0AP004698.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0498E12.
GenBankAK1039730.0AK103973.1 Oryza sativa Japonica Group cDNA clone:001-016-D01, full insert sequence.
GenBankAK0736170.0AK073617.1 Oryza sativa Japonica Group cDNA clone:J033051J11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650326.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLQ84PV00.0Q84PV0_ORYSJ; Myb-like protein
STRINGLOC_Os08g06240.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP81421212
MonocotsOGMP103112731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.13e-39MYB_related family protein