PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g04390.2
Common NameLOC4344627, OJ1119_D01.9, Os08g0138500, OSNPB_080138500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 254aa    MW: 27226.8 Da    PI: 5.8206
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g04390.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.4e-1085133354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +++  rE+ RRd++N++f eL + l +    +  K +Ka+iL  A++ + +L
  LOC_Os08g04390.2  85 TSKASREKIRRDKMNDRFLELGTTLEPG---KPVKSDKAAILSDATRMVIQL 133
                       67889**********************9...99*************988777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-1280151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.3682133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.48E-883136No hitNo description
Gene3DG3DSA:4.10.280.104.5E-1286156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-786133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-888139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146860.00211149180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSGTPADGGG GGGGGGGGSG DDWFLDCGIL EDLPAAACGA FPWDASPSCS NPSVEVSSYV  60
NTTSYVLKEP GSNKRVRSGS CGRPTSKASR EKIRRDKMND RFLELGTTLE PGKPVKSDKA  120
AILSDATRMV IQLRAEAKQL KDTNESLEDK IKELKAEKDE LRDEKQKLKV EKETLEQQVK  180
ILTATPAYMP HPTLMPAPYP QAPLAPFHHA QGQAAGQKLM MPFVGYPGYP MWQFMPPSEV  240
DTSKDSEACP PVA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.183330.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1172430050.0
Expression AtlasQ6ZKI8-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g04390.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g04390
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1029510.0AK102951.1 Oryza sativa Japonica Group cDNA clone:J033115D14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649810.10.0PREDICTED: transcription factor ILR3
SwissprotQ9FH379e-71ILR3_ARATH; Transcription factor ILR3
TrEMBLQ6ZKI80.0Q6ZKI8_ORYSJ; BHLH transcription factor
STRINGLOC_Os08g04390.20.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7551766
MonocotsOGMP20233885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.15e-72bHLH family protein
Publications ? help Back to Top
  1. Cooper B, et al.
    A network of rice genes associated with stress response and seed development.
    Proc. Natl. Acad. Sci. U.S.A., 2003. 100(8): p. 4945-50
    [PMID:12684538]