PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g04170.1
Common NameLOC4344611, OJ1613_G04.4-1, Os08g0135800, P0680F05.43-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 959aa    MW: 105584 Da    PI: 8.8041
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g04170.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.3e-07319339526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C++f + G C++G++C++ H+
  LOC_Os08g04170.1 319 PCHDFVK-GRCSRGANCRYVHD 339
                       8******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.018230255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.267234256IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4234254IPR000571Zinc finger, CCCH-type
SMARTSM003560.0021314340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.126314341IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4317340IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4319339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.817373400IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-7374398IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-5374399IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4377399IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001059developmental stageJ bicellular pollen stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 959 aa     Download sequence    Send to blast
MTGETRKERS KWDTKGPPDI VEISEDESLP MNMDDHKKGN DDHRKGSDLL PSQDFGHGND  60
KQIGESLNLK STVSMHHGSA GHEQDRADGL NKDIKERSSK ASSERLPLRM GDEDHNKNDW  120
HNRGFEKAAG NQGMSRYADD RRRGDGWGTT LSRGYSSRIS SSGPDAWKRS RSPLSPRGGW  180
NRSRRNRSRS RSRSRSIGRG RGRSRSRSRS PYFSDRGSEW RVERSRSSGG PALPCRDFVA  240
GRCRRGSNCR FPHEDGVRRQ FDEHYPVDSR EKYGHQNRDF MDPREQDDYL RNRPPRGGHY  300
DEGTWERSEP RREYRSTMPC HDFVKGRCSR GANCRYVHDD STPHGGWRDE VRDNAIGRSG  360
PDSSYGNRTE HRRTNKNPCK FFANGGCRRG QNCPYLHEEA SQSQMGLGAP DEPGYTGGPT  420
TRGDYLSWSE QNNSVQASSH VLSRDDRENP VPQGTGRNDS RYENKNRHSK DAGSSQYQIF  480
PQDDFGSVGQ NKPEIAASQL PQFIPSVQTG TESINIDKVS DMGGQSGPGT VGNLSMQIGM  540
HSANLLGGHN LGQKAESQDA ISQISAAPSL PGATQLQNTT SSVPLNSQVQ QSDFSLHPNR  600
QDQFAVPHAT TNNSAPSMQS QPVAPYMGHS QHGYIMGAQS LPDLSVHNGQ IFNVGQVPQN  660
LPTIVHAGQN QATSDTPNLG RDSGDQGLQN THNFQPVAPN EQTQSQTLQG LSVVASSSSV  720
DMAGAPLSHN AVSSQEEVRR VTASLAQYFV PSLTADTSGL QSSQPDPNSS LMNNSSAAPQ  780
AVQPNHWPWL QQAGMVQPSH IVPPEQPAPQ TFQAPMAAGS SNGNPLLLPH SVAPTVPAAA  840
LATNETTPAE NKKEEPKDTD AEANEDGENK KSKDSKALKM FKLALADFVK DALKPTWKEG  900
QMSREVHKTI VKKVVDKVTT TVENTPQTKE KIDIYMSYSR EKLNKLVQAY VGKYAKKD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198208RGRGRSRSRSR
2200208RGRSRSRSR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.326890.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329856640.0
Expression AtlasQ6YYC0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g04170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g04170
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004550.0AK100455.1 Oryza sativa Japonica Group cDNA clone:J023091E18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650360.10.0PREDICTED: zinc finger CCCH domain-containing protein 55
SwissprotQ6YYC00.0C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55
TrEMBLA2YR000.0A2YR00_ORYSI; Putative uncharacterized protein
TrEMBLA0A0E0I7280.0A0A0E0I728_ORYNI; Uncharacterized protein
STRINGLOC_Os08g04170.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1203666
MonocotsOGMP77663443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.13e-09C3H family protein
Publications ? help Back to Top
  1. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]