PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g03610.1
Common NameLOC4344587, LOL4, Os08g0130100, OsJ_25929, P0582D05.124
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LSD
Protein Properties Length: 148aa    MW: 15914.4 Da    PI: 8.8745
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g03610.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD127.74.5e-094769123
           zf-LSD1  1 CggCrtlLsYPrGApsVRCalCd 23
                      C+gC tlL Y rGA+++RC++C+
  LOC_Os08g03610.1 47 CSGCPTLLFYNRGASNIRCPSCN 69
                      **********************8 PP

2zf-LSD132.51.4e-1085109125
           zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                       Cg+Crt+L+ P+GA+ V+Ca C  V
  LOC_Os08g03610.1  85 CGQCRTTLMHPPGASTVQCATCRYV 109
                       **********************876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010538.8E-6434IPR005735Zinc finger, LSD1-type
PfamPF069432.1E-4730IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.3E-104572IPR005735Zinc finger, LSD1-type
PfamPF069433.5E-94769IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010539.7E-1182112IPR005735Zinc finger, LSD1-type
PfamPF069432.9E-1185109IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MQDQLICSGC RRVVQYRRGV AGVCCPGCNT LTAVNPSAVA DMSELICSGC PTLLFYNRGA  60
SNIRCPSCNR LNSTRSANQI AHLTCGQCRT TLMHPPGAST VQCATCRYVN HVRDARPQTV  120
LVENPKTLDD KGKLVSNVVV GVTSWKR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.149290.0callus| flower| leaf| root| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ84UR0
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Function -- GeneRIF ? help Back to Top
  1. The sequencing and physiological functions of OsLSD1 are reported.
    [PMID: 15915636]
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g03610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g03610
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8307650.0CT830765.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA016M05, full insert sequence.
GenBankAK1204540.0AK120454.1 Oryza sativa Japonica Group cDNA clone:J013104B05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648991.11e-105PREDICTED: protein LOL4
SwissprotQ84UR01e-107LOL4_ORYSJ; Protein LOL4
TrEMBLA0A0D3GW101e-105A0A0D3GW10_9ORYZ; Uncharacterized protein
TrEMBLB8BAG41e-105B8BAG4_ORYSI; Putative uncharacterized protein
TrEMBLA0A0E0QDY21e-105A0A0E0QDY2_ORYRU; Uncharacterized protein
TrEMBLI1QFD01e-105I1QFD0_ORYGL; Uncharacterized protein
STRINGLOC_Os08g03610.11e-104(Oryza sativa Japonica Group)
STRINGBGIOSGA027709-PA1e-104(Oryza sativa Indica Group)
STRINGORGLA08G0013100.11e-104(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11461753
MonocotsOGMP123332938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.71e-40LSD family protein
Publications ? help Back to Top
  1. Wang L,Pei Z,Tian Y,He C
    OsLSD1, a rice zinc finger protein, regulates programmed cell death and callus differentiation.
    Mol. Plant Microbe Interact., 2005. 18(5): p. 375-84
    [PMID:15915636]