PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g01330.1
Common NameLOC4344435, Os08g0103900, OSNPB_080103900, P0015C07.34
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 325aa    MW: 36235.3 Da    PI: 6.3172
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g01330.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.11.4e-52141471128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka....eekewyfFskrdkkyatgkrknratksgyWka 85 
                       +ppGfrFhPt+eelv +yL++kv+++k++l ++i+e+d+y++ePwdL++       +    e++ewyfFs +d+ky++g+r+nrat++g+Wka
  LOC_Os08g01330.1  14 VPPGFRFHPTEEELVGYYLARKVASQKIDL-DIIQELDLYRIEPWDLQErckyG--GhggdEQTEWYFFSYKDRKYPSGTRTNRATAAGFWKA 103
                       69****************************.99**************9535441..14443666***************************** PP

               NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       tg+dk+vls+ +++++g++ktLvfykgrap+g+ktdW++heyrl
  LOC_Os08g01330.1 104 TGRDKPVLSSpSTRVIGMRKTLVFYKGRAPNGRKTDWIIHEYRL 147
                       ********9988899***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-588168IPR003441NAC domain
PROSITE profilePS5100558.52214168IPR003441NAC domain
PfamPF023658.7E-2715147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009735Biological Processresponse to cytokinin
GO:0009737Biological Processresponse to abscisic acid
GO:0009741Biological Processresponse to brassinosteroid
GO:0045491Biological Processxylan metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048759Biological Processxylem vessel member cell differentiation
GO:0050832Biological Processdefense response to fungus
GO:0071365Biological Processcellular response to auxin stimulus
GO:0090059Biological Processprotoxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MDRHEEEAGE SPCVPPGFRF HPTEEELVGY YLARKVASQK IDLDIIQELD LYRIEPWDLQ  60
ERCKYGGHGG DEQTEWYFFS YKDRKYPSGT RTNRATAAGF WKATGRDKPV LSSPSTRVIG  120
MRKTLVFYKG RAPNGRKTDW IIHEYRLQSN EHAPTQEEGW VVCRAFQKPM PNQQQHRLSY  180
GCIPGSYGAG AYAAVPDNYS LLLHHDNPSF AGRPLMSAAA SALFANNNNN SVVDHSNILS  240
SESKLHFSDM MPPLESPTIV DGEGYVSQAS SCVDVDQQAG IVDWNLLTSL LPPPAHQLFH  300
HLPSASSSKN SNNISSSGFI DDRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-5331684168Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.569430.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329958200.0
Expression AtlasQ69U51-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00017PBMTransfer from AT1G71930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g01330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g01330
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6340720.0JN634072.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 3 mRNA, complete cds.
GenBankAK1106110.0AK110611.1 Oryza sativa Japonica Group cDNA clone:002-168-H04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650248.10.0PREDICTED: NAC domain-containing protein 105
SwissprotQ9C8W91e-90NAC30_ARATH; NAC domain-containing protein 30
TrEMBLQ69U510.0Q69U51_ORYSJ; Os08g0103900 protein
STRINGLOC_Os08g01330.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
MonocotsOGMP25943791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.11e-89vascular related NAC-domain protein 7
Publications ? help Back to Top
  1. Zhong R, et al.
    Transcriptional activation of secondary wall biosynthesis by rice and maize NAC and MYB transcription factors.
    Plant Cell Physiol., 2011. 52(10): p. 1856-71
    [PMID:21908441]