PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os08g01090.1
Common NameB1147B12.12, IDEF1, LOC4344415, Os08g0101000, OsJ_25718
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 363aa    MW: 39941.6 Da    PI: 7.7295
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os08g01090.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.26.2e-13255339383
                       EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS...-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg...rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                       k+lt+sdv++ gr+vlpkk ae+    + ++ +  l + d       +W++k++y  ++ks++y+l     eF k +gL++gD+++++
  LOC_Os08g01090.1 255 KELTKSDVGNVGRIVLPKKDAEASlpPLLQRDPLILHMDD--MvlpVTWKFKYRYwpNNKSRMYILD-SAGEFLKTHGLQAGDVIIIY 339
                       899******************9998844445565566666..3446*********777777777777.99***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.69E-19252350No hitNo description
SuperFamilySSF1019365.49E-16252340IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-20252347IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.557253355IPR003340B3 DNA binding domain
SMARTSM010196.1E-7253353IPR003340B3 DNA binding domain
PfamPF023621.0E-9255339IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001015developmental stageK second mitotic division stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGQMDGGDGG GGGHPYHYQA LLAAVHQQTV PFPNPFPAPS SGAEPPHPHN HNHNHNHNHN  60
IHNSHNHNHN HNAAPHPCHT PTPTPTPRGF ADWSASTSAF TSLAAHSSTA PSNAVHYSFS  120
PCYAFWTHYM LNKNAYPTSF PAPHDDHLRL ANNNHPRDAP GPASSYGVES FTSPSMAPNI  180
CTHMPPIEGP ISAKEDKKPE ILPRVVKSSD ELETRNSNVE FHSETVGTLP ESKQGHDSRA  240
TKLLNSGEYQ VILRKELTKS DVGNVGRIVL PKKDAEASLP PLLQRDPLIL HMDDMVLPVT  300
WKFKYRYWPN NKSRMYILDS AGEFLKTHGL QAGDVIIIYK NLAPGKFIIR GEKAIHQQTT  360
NP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.138090.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329926650.0
Expression AtlasQ6Z1Z3-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:18025467}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator involved in iron deficiency response and tolerance. May regulate directly iron transporters or other transcription factors involved in iron-deficiency response. Binds specifically to the DNA sequence 5'-CATGC-3' of the IDE1 element found in the promoter of the barley iron deficiency-inducible gene IDS2. {ECO:0000269|PubMed:18025467}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os08g01090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs08g01090
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1074560.0AK107456.1 Oryza sativa Japonica Group cDNA clone:002-128-C10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648159.10.0PREDICTED: B3 domain-containing protein IDEF1 isoform X1
SwissprotQ6Z1Z30.0IDEF1_ORYSJ; B3 domain-containing protein IDEF1
TrEMBLA0A0D3GVE80.0A0A0D3GVE8_9ORYZ; Uncharacterized protein
STRINGLOC_Os08g01090.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7881766
MonocotsOGMP113462831
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.13e-34B3 family protein
Publications ? help Back to Top
  1. Kobayashi T, et al.
    The transcription factor IDEF1 regulates the response to and tolerance of iron deficiency in plants.
    Proc. Natl. Acad. Sci. U.S.A., 2007. 104(48): p. 19150-5
    [PMID:18025467]