PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g48550.1
Common NameLOC4344324, NAC15, Os07g0684800, OSJNBa0060O17.23, OSNPB_070684800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 302aa    MW: 34121.6 Da    PI: 5.6443
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g48550.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.25.2e-56211471128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdee+v++yL++k++++++++  vi++v+++++ePwdLp+k+k +ekew+fF+++d+ky+tg r+nrat+sgyWkatgkdke++
  LOC_Os07g48550.1  21 LPPGFRFHPTDEEVVTHYLTRKAQDRSFSC-VVIADVNLNNCEPWDLPSKAKMGEKEWFFFCHKDRKYPTGMRTNRATASGYWKATGKDKEIF 112
                       79**************************99.78***************99999**************************************** PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + +g lvg+kktLvfy grap+gekt Wvmheyrl
  LOC_Os07g48550.1 113 RGRGLLVGMKKTLVFYMGRAPRGEKTPWVMHEYRL 147
                       *9*******************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-6318171IPR003441NAC domain
PROSITE profilePS5100557.85621171IPR003441NAC domain
PfamPF023654.5E-2922147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSESEVSVIN QLEEEETRLE LPPGFRFHPT DEEVVTHYLT RKAQDRSFSC VVIADVNLNN  60
CEPWDLPSKA KMGEKEWFFF CHKDRKYPTG MRTNRATASG YWKATGKDKE IFRGRGLLVG  120
MKKTLVFYMG RAPRGEKTPW VMHEYRLDGK LPPNLPRSAK EEWAVCRVFN KDLAAKIAQM  180
PPPPFPRNDS FDLDLDDFLH LDADLPPLID DPFASTSTLK TEPPPPANLM HNHYGYFSLP  240
ASATNYNHSS GAMADQAIRR FCKAEASTAC FSGADADVDP VVDELLSFPD SITDYSYIWK  300
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-551717613170NO APICAL MERISTEM PROTEIN
1ut4_B7e-551717613170NO APICAL MERISTEM PROTEIN
1ut7_A7e-551717613170NO APICAL MERISTEM PROTEIN
1ut7_B7e-551717613170NO APICAL MERISTEM PROTEIN
3swm_A8e-551717616173NAC domain-containing protein 19
3swm_B8e-551717616173NAC domain-containing protein 19
3swm_C8e-551717616173NAC domain-containing protein 19
3swm_D8e-551717616173NAC domain-containing protein 19
3swp_A8e-551717616173NAC domain-containing protein 19
3swp_B8e-551717616173NAC domain-containing protein 19
3swp_C8e-551717616173NAC domain-containing protein 19
3swp_D8e-551717616173NAC domain-containing protein 19
4dul_A7e-551717613170NAC domain-containing protein 19
4dul_B7e-551717613170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.73620.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329838990.0
Expression AtlasQ6Z4N0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g48550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g48550
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1854440.0JN185444.1 Oryza sativa Japonica Group NAC transcription factor 15 (NAC15) mRNA, complete cds.
GenBankCU4055640.0CU405564.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C110F22, full insert sequence.
GenBankCT8415730.0CT841573.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105A13, full insert sequence.
GenBankAK1056450.0AK105645.1 Oryza sativa Japonica Group cDNA clone:001-200-F06, full insert sequence.
GenBankAK0738760.0AK073876.1 Oryza sativa Japonica Group cDNA clone:J033072L16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647863.10.0PREDICTED: NAC domain-containing protein 92
SwissprotQ9FLR32e-83NAC79_ARATH; NAC domain-containing protein 79
TrEMBLA0A0D3GV370.0A0A0D3GV37_9ORYZ; Uncharacterized protein
TrEMBLA2YQ180.0A2YQ18_ORYSI; Putative uncharacterized protein
TrEMBLA0A0E0I5U10.0A0A0E0I5U1_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QCW70.0A0A0E0QCW7_ORYRU; Uncharacterized protein
TrEMBLQ6Z4N00.0Q6Z4N0_ORYSJ; NAC transcription factor 15
STRINGBGIOSGA023698-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os07g48550.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.22e-83Arabidopsis NAC domain containing protein 87