PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g48260.1
Common NameLOC4344296, OJ1205_F02.22, Os07g0680400, OSJNBa0008J01.9, OSNPB_070680400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 334aa    MW: 34837.5 Da    PI: 6.5945
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g48260.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.91e-23122183259
                       --SS-EEEEEEE--TT-S.S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgse.fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg +WrKYGqK++++s+ +prsYYrCt++   gC+++k+v++s+++ + ++i Y geH+++
  LOC_Os07g48260.1 122 EDGRQWRKYGQKHIQDSPnNPRSYYRCTHRpdqGCMATKQVQTSESNSSEFVISYYGEHTCS 183
                       89**************9736*********9999***************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.0E-25107185IPR003657WRKY domain
SuperFamilySSF1182904.71E-23114185IPR003657WRKY domain
PROSITE profilePS5081120.461116185IPR003657WRKY domain
SMARTSM007741.1E-34121184IPR003657WRKY domain
PfamPF031066.3E-23122182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MASPDGGVGD GGAEPHEVMD DLLEMREQAA MLHSMLHGTS PSSCAAAAST RQLNQLIDGV  60
MSRLQSSSLS VMSPGGGGGR RGSGGRKKKG AKAVAGPHRR SSSGRRRSKS PFVRMVTTKE  120
LEDGRQWRKY GQKHIQDSPN NPRSYYRCTH RPDQGCMATK QVQTSESNSS EFVISYYGEH  180
TCSDPSTIPF VVEAEAPAAD YANLISFGSS GGASTSRVDP LRQSRHRLMA EAVDPTPSCS  240
FANCHSPVLS SECASEAAAL SSSLPLSAVV GSAVTTPSTS IVGSAPADYD WPSGLAGGDM  300
AGSFPSSPSS LGFMTGSFGN LPGDDDDMFG FDP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.113210.0leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329961090.0
Expression AtlasQ7XHX5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g48260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g48260
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1109000.0AK110900.1 Oryza sativa Japonica Group cDNA clone:002-173-B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646873.10.0PREDICTED: probable WRKY transcription factor 70
RefseqXP_015646872.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLQ7XHX50.0Q7XHX5_ORYSJ; Os07g0680400 protein
STRINGLOC_Os07g48260.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
MonocotsOGMP125272837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-19WRKY DNA-binding protein 46