PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g47790.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 215aa    MW: 23512.4 Da    PI: 6.7903
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g47790.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-1968118256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        y+G+r+++ +g+W+AeIrdp +    +r++lg+f tae Aa+a+++a+++++g+
  LOC_Os07g47790.2  68 LYRGIRRRP-WGKWAAEIRDPAK---GARVWLGTFATAEAAARAYDRAARRIRGA 118
                       69*******.**********843...4*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.10E-1567126No hitNo description
PROSITE profilePS5103224.42168125IPR001471AP2/ERF domain
PfamPF008478.5E-1368117IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2268126IPR016177DNA-binding domain
SMARTSM003803.5E-3768131IPR001471AP2/ERF domain
PRINTSPR003672.5E-116980IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3169126IPR001471AP2/ERF domain
PRINTSPR003672.5E-1191107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MCGGAIISDF IPQREAHRAA TGSKRALCAS DFWPSASQEA ADFDHLTAPC TFTPDQEEPT  60
KKRERKTLYR GIRRRPWGKW AAEIRDPAKG ARVWLGTFAT AEAAARAYDR AARRIRGAKA  120
KVNFPNEDPP LDDPAADGHS HGGAAIPCRE FMDYDAVMAG FFHQPYVVAD GVPAVPAEEA  180
PTVAYVHHHL PPQPQQDAGL ELWSFDNIHT AVPM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2269125663ATERF1
3gcc_A1e-2269125663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16175KRERKTLYRGIRRRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.89200.0callus| flower| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO317456660.0
Expression AtlasQ7Y047-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g47790.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g47790
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2974470.0AY297447.1 Oryza sativa (japonica cultivar-group) AP2 domain transcription factor EREBP mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644689.11e-141PREDICTED: ethylene-responsive transcription factor RAP2-3
SwissprotO222596e-38ERF71_ARATH; Ethylene-responsive transcription factor ERF071
SwissprotP427362e-37RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLQ7Y0471e-143Q7Y047_ORYSJ; AP2 domain transcription factor EREBP
STRINGBGIOSGA023726-PA1e-140(Oryza sativa Indica Group)
STRINGLOC_Os07g47790.11e-140(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-25ERF family protein