PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os07g45450.1
Common NameP0427D10.118
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 326aa    MW: 35469.6 Da    PI: 4.1788
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os07g45450.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR122.63.4e-07249273125
              FAR1   1 kfYneYAkevGFsvrkskskkskrn 25 
                       +fYn YA++vGFs++k+++++s+++
  LOC_Os07g45450.1 249 DFYNGYAYMVGFSTCKASNYHSRKT 273
                       6*********************876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.4E-5249274IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MLFRLSQEGG ITYTKLIQQV SVSSNAILPG AQVAGGLPLL QNSCGSFMQL LQAPIESETA  60
LYLTSNRFEY DNTFWGFDPH NGYQQNDLQN AQTDTSQICN SLPQSVDVHP PVASLDMLYD  120
EMQKSSADVD NQAEMCRSTV QLKASSVEVI YNEMQTQNIE ADACFDQHFE QATEEDLLSD  180
HAIVTFQQVE EIEQDKSAEN PNQNFSEEDI NIFLENESVT AVQRGGQEAN SAHVPSINKV  240
FADENEAFDF YNGYAYMVGF STCKASNYHS RKTVDGDTAA GSTSEHGAAT RHSAAAGRVG  300
SAAAAASKEA ATPGTGKRGE REGRW*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ8H4B1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os07g45450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs07g45450
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankAP0042720.0AP004272.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0427D10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642362.11e-128PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
TrEMBLQ8H4B10.0Q8H4B1_ORYSJ; Putative uncharacterized protein P0427D10.118
STRINGLOC_Os07g45450.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2200135